| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_3943 |
|---|
| Symbol | |
|---|
| ID | 5664327 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella pealeana ATCC 700345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009901 |
|---|
| Strand | + |
|---|
| Start bp | 4793708 |
|---|
| End bp | 4795261 |
|---|
| Gene Length | 1554 bp |
|---|
| Protein Length | 517 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 641238607 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001503788 |
|---|
| Protein GI | 157963754 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCGTTA AAAATAGACT CGCTCAGATA ACTCGTGACC CTAACCTTTC GCCAAAGCAA
AAATCTAACT TCTTAGCCTT AGAAGCTGAG GCTAGCCTGC CCTATATGGC GATCTCCGAT
GCAGTATCTG AAGCTAAAAA TAGCGGCATT ATCTGTGATA TGTTTGAAGG CAACGCACCA
TTCAAGCCAA GATATGTGCT ACCCGATTAC GCCAAGTTTC TTCAGAATGG TTCTGAGTAC
TTAGAGCTAA GTCCGGCGCA GGACTTAGAT GAAGCACTTA ATGCTCTGAC GATTATTTAT
CACCACGTGC CATCGGTCAC CAATATTCCC GTCTATCTCG GTCAGCTCGA CGATATTTTG
CTGCCATTCT GCCAAGGCCT AGAGCCTGAA GCTATTTACC GCAAGTTAAA GCTATTCTGG
ATCATGCTAG ATCGCACCTT GCCGGATGCC TTTATGCACG TAAACATAGG CCCGACTGAC
AATATCGTTT GTCGTACCAT TTTACGCGTC GATGCAGAGC TTAAGCAGAT AGCCCCCAAT
CTGACTTTTA TGTATGACCC AGAGATCACC CCTGATGAAC TACTACAAGT CGCCGCCAGC
AATATCTGTG AGTGCAGCAA GCCGCATATC GCCAACTACC CACTGCACGC CAATAGCTTC
GATGACAAAG GCTTTGGTAT CGTCAGCTGC TATAACTCAC TGCCACTCGC TGGCGGCGCG
AATACCTTAG TCAGACTGAA CCTGAAACAA GTTGCGTTAA AAGCAAGCAG TGTGGGCGAC
TTTTTTACCC AAGTTCTGCC GCACTATTGC CAGCTGACTT ACGAGTTAAT CGATGCTCGC
GCTAAGTTCT TGCATGAAGA GTCCAATTTC TTCAACAGTT TCTTAGTCAA AGAGGGCCTG
ATTGAAGAGT CCCGTTTCGC GCCTATGTTT GGCATCTACG GCATGGCCGA AGCGGTCAAT
ATCTTGCAAG GATCGCCTGA CTTTAATGAA GACAACATAG ATAAGCCTAG CAGCCATTAT
GGCCATAATG CCGCTGCCAA CGCGCTGGGC CACAAGATCT CCAAAGCCCT AGATGGCATA
GTGAAATCGA CTCAGGTGAA ATACGGTTAT AACGGCCTCG CCCTGCTACA TTCACAGGGC
GGGATCAGTA TAGATAAAGA TGTGACACCG GGTGTGCGTA TTCCATATGG CACAGAACCA
AACCCGATCG CCCATATTCA AGCGCTAGCC GAGCATCACC AGTATTACAC CTCTGGTATT
AGCGACATCC TCACCATAGA TGAGACGGTA AAAGCTAACC CGCAGGCAAT GATGCAGCTG
TGTAAAGGTG CGCTAAGCCT AGGTTTCCGT GAGTTTACCG CCAACGTAGC CTCAAATGAT
TTGGTTCGCG TCACCGGTTA TATGATCAAA CTTTCAGATA TCGCTAGCTT TAAGGCTGAG
GGCTCACGCA CCAACACCAC CTGGTTAGGT GCTGAGGCTG CGCAAAACAC CAAAATTTTA
GAGCGTCAGC CAAGAGTTGT TGCCCATGAG CACACACCGG CATATAGCAA GTAA
|
|---|
| Protein sequence | MTVKNRLAQI TRDPNLSPKQ KSNFLALEAE ASLPYMAISD AVSEAKNSGI ICDMFEGNAP
FKPRYVLPDY AKFLQNGSEY LELSPAQDLD EALNALTIIY HHVPSVTNIP VYLGQLDDIL
LPFCQGLEPE AIYRKLKLFW IMLDRTLPDA FMHVNIGPTD NIVCRTILRV DAELKQIAPN
LTFMYDPEIT PDELLQVAAS NICECSKPHI ANYPLHANSF DDKGFGIVSC YNSLPLAGGA
NTLVRLNLKQ VALKASSVGD FFTQVLPHYC QLTYELIDAR AKFLHEESNF FNSFLVKEGL
IEESRFAPMF GIYGMAEAVN ILQGSPDFNE DNIDKPSSHY GHNAAANALG HKISKALDGI
VKSTQVKYGY NGLALLHSQG GISIDKDVTP GVRIPYGTEP NPIAHIQALA EHHQYYTSGI
SDILTIDETV KANPQAMMQL CKGALSLGFR EFTANVASND LVRVTGYMIK LSDIASFKAE
GSRTNTTWLG AEAAQNTKIL ERQPRVVAHE HTPAYSK
|
|---|
| |