| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_3920 |
|---|
| Symbol | |
|---|
| ID | 5664304 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella pealeana ATCC 700345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009901 |
|---|
| Strand | - |
|---|
| Start bp | 4768626 |
|---|
| End bp | 4769636 |
|---|
| Gene Length | 1011 bp |
|---|
| Protein Length | 336 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 641238584 |
|---|
| Product | BNR repeat-containing glycosyl hydrolase |
|---|
| Protein accession | YP_001503765 |
|---|
| Protein GI | 157963731 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4447] Uncharacterized protein related to plant photosystem II stability/assembly factor |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGATAT TCATGCTGTT AATAAGCTTA TTTAGTTTTG CTACTGTGGC GATGGAATGG
AATATTCAAA GCCTAGCCCC CGGTGTTTCA TTTCGAGGTA GCGCAGTTTT GGATGGCGTG
GTTTGGGTGA CTGGGACAGA TAATCGCGTC TATATCTCTA AAGATTCAGG TAACAGCTGG
CAAGATGTAT CGGTAAAGGG GCTGCCTTTG ACTGACTTTC GCGATATTGA AGTGTTCGAT
GCCAATACGG CGATTGTGAT GGGAGCGGGT GAAGGTGGCT TATCTAAGCT GTATATCACT
CAGAACCAGG GTCTAAGCTG GCAACTCTTG TTTGATAATC CCGATGAGCT TGGCTTTTTC
AACTCAATTG CCTTTTGGGA TCGTAATAAC GGGTTACTGC TGGGAGATCC TGTTGGTGGT
TGCTATGTGA TATTACGTAC CTCTGATGGT GGTAAAAGCT GGCAACGAGT TGCCCAAGGT
GAGTTGCCTG AAATGCTCGA TAAAGAGGTC GCCTTTGCCG CCAGTGGTAA TACATTAATT
GTTGGCAAAA GAGGGCGGGC TTGGTTTACC ACCGGAGGCT ATAGTAGCTC AGCTTATAGT
AGCGCTGACT CGGGGCAGCA CTGGCGCCGG CGTCCAATTG CTCTCTATGA TGATACCCAA
ACCGCAGGTG GCTATGCGCT AGCATTTAAT CATTTAGGTG ATCTATTTGT GCTGGGAGGA
GATTATCAGC AACGAGATAA GTTTGATGCC AATATGGTCT ACAGGAAAGG CTATGTATGG
CATAAAGCGC CGGGTACCAC ACCAGGCCTA CGCACAGCCA TGGCGTGTTA CCAAGAGATT
TGCATCGCGA CCGGTAAGCT ATCGTCAGAT ATTTCAATCG ATCATGGTTA CAGTTGGCAG
CCACTGTTGA TCAATGGTCA GGCTCAGGGC TTTTTTACGC TCGCGATTGA CGGTAACACC
TTAGTGGCTG GTGGGCATGA TGGCCGAGTC GCCGTGTATA CTTTTGAATA G
|
|---|
| Protein sequence | MKIFMLLISL FSFATVAMEW NIQSLAPGVS FRGSAVLDGV VWVTGTDNRV YISKDSGNSW
QDVSVKGLPL TDFRDIEVFD ANTAIVMGAG EGGLSKLYIT QNQGLSWQLL FDNPDELGFF
NSIAFWDRNN GLLLGDPVGG CYVILRTSDG GKSWQRVAQG ELPEMLDKEV AFAASGNTLI
VGKRGRAWFT TGGYSSSAYS SADSGQHWRR RPIALYDDTQ TAGGYALAFN HLGDLFVLGG
DYQQRDKFDA NMVYRKGYVW HKAPGTTPGL RTAMACYQEI CIATGKLSSD ISIDHGYSWQ
PLLINGQAQG FFTLAIDGNT LVAGGHDGRV AVYTFE
|
|---|
| |