Gene Spea_3915 details

Gene Information

• Locus tag: Spea_3915
• ID: 5664299
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella pealeana ATCC 700345
• Kingdom: Bacteria
• Replicon accession: NC_009901
• Strand: -
• Start bp: 4762221
• End bp: 4764050
• Gene Length: 1830 bp
• Protein Length: 609 aa
• Translation table: 11
• GC content: 46%
• IMG OID: 641238579
• Product: GTP-binding protein TypA
• Protein accession: YP_001503760
• Protein GI: 157963726
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG1217] Predicted membrane GTPase involved in stress response
• TIGRFAM ID: [TIGR00231] small GTP-binding protein domain; [TIGR01394] GTP-binding protein TypA/BipA

Plasmid Coverage information

• Num covering plasmid clones: 23
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGTAAGAG GTTTAGCCGT GTTAGAGAAT TTACGTAACA TCGCCATTAT TGCACACGTT 
GACCATGGTA AGACTACCTT GGTTGATAAG TTGCTGGCGC AGTCAGGAAC CCTTGAGTCT 
CGAGGAGAAG CCACTGAGCG GGTGATGGAT TCAAATGATC TTGAAAAGGA ACGTGGTATC 
ACGATTCTGG CCAAGAACAC TGCCATCAAG TGGAACGATT ACCGTATCAA CATCGTTGAT 
ACCCCTGGTC ACGCCGATTT CGGTGGTGAG GTAGAGCGTG TTCTATCTAT GGTTGACTCA 
GTATTACTAC TAGTTGACGC AGTTGATGGT CCAATGCCAC AGACTCGCTT CGTGACTAAG 
AAAGCTTTCG CTCAAGGTCT AAAGCCAATC GTTGTTATCA ACAAGATTGA CCGTCCAGGC 
GCACGTCCAG ATTGGGTTAT TGACCAAGTA TTTGACTTGT TCGACAACCT AGGCGCTACC 
GATGAGCAAC TAGATTTCCC AATCGTTTAT GCTTCTGCGC TAAACGGTTT TGCTACATTA 
GATCCAGACG AAGTTAGCGC TGACATGACG CCGCTATTCG AAACGATCGT TGAAAAAGTT 
TCTTCACCAG ATGCTGATGC TGAAGGTGAT TTCCAGATGC AAATTTCGCA AATCGACTAC 
AACTCATACG TGGGTGTTAT CGGTATTGGC CGCATCAAGC GTGGTAGTGT TAAAACTAAC 
CAACAAGTGA CTATTCTTGG CGCTGACGGC AAGAAGCGTA ACGGTAAAAT CGGTCAAGTA 
TTAGGTTACA TGGGCCTTGA GCGTCATGAA GTTTCTGATG CAACTGCTGG TGACATCGTT 
GCGATTACTG GTCTTGGCCA GTTGCTAATT TCTGACACTG TTTGTGCAAC TACTAACGTA 
GAAGCGCTAC CTCCATTGTC TGTTGATGAG CCAACACTAA CCATGACTTT CCAGGTGAAC 
ACTTCTCCGT TCGCTGGTAA AGAAGGTAAG TACGTGACTT CACGTAATAT CCTTGAGCGT 
CTACAGCAAG AACTAGTACA CAACGTAGCA TTGCGCGTTG AAGAAACTGA CAGCCCAGAT 
CGTTTCCGCG TATCAGGCCG TGGTGAACTT CACCTTTCAA TCTTGATTGA AAACATGCGT 
CGTGAAGGTT ACGAGCTAGC TGTATCTCGT CCAGAAGTTA TCGTTAAAGA GATCGATGGC 
GAGATGTGTG AGCCGTTCGA AACACTAACT GTTGACGTTC AAGAAGAACA TCAAGGTGCA 
GTGATCGAGA AGCTTGGTAT CCGTAAGGGT GACATGAAGG ACATGCAGTT AGACGGTAAG 
GGTCGTGTAC GTATCGATTT CGTTATCCCT AGCCGTGGTC TAATCGGTTT CCAAACTGAG 
TTCATGACAG CGACTTCTGG TACTGGTCTA ATTTACCATT CATTCGACCA TTACGGTCCA 
TTGAAAGGTG GTGACATTGG TCAACGTGCT CGTGGCGTAT TGATCTCTAA CGCTACTGGT 
AAAGCACTAA CATTCGCACT ATTCGGTCTA CAAGAGCGTG GTCGTCTGTT TATTACTCAC 
GCTACAGAAG TATACGAAGG CCAAGTAGTT GGTCTTCACG CACGTGCTAA CGACCTAACA 
GTTAACTGTT TGAAAGGTAA GCAGCTAACT AACATGCGTG CATCTGGTAC TGACGAAGCT 
CAAGTACTAA CTCCGCATAT CGAAATGACA CTTGAGCAAG CTCTTGAGTT CATCGATGAT 
GACGAATTAG TAGAAGTAAC GCCACTGAAC ATCCGTGTTC GTAAGCGTTT CTTGACTGAA 
AACGAGCGTA AGCGTCATAA CCGTAAGTAA 

 

Protein sequence

MVRGLAVLEN LRNIAIIAHV DHGKTTLVDK LLAQSGTLES RGEATERVMD SNDLEKERGI 
TILAKNTAIK WNDYRINIVD TPGHADFGGE VERVLSMVDS VLLLVDAVDG PMPQTRFVTK 
KAFAQGLKPI VVINKIDRPG ARPDWVIDQV FDLFDNLGAT DEQLDFPIVY ASALNGFATL 
DPDEVSADMT PLFETIVEKV SSPDADAEGD FQMQISQIDY NSYVGVIGIG RIKRGSVKTN 
QQVTILGADG KKRNGKIGQV LGYMGLERHE VSDATAGDIV AITGLGQLLI SDTVCATTNV 
EALPPLSVDE PTLTMTFQVN TSPFAGKEGK YVTSRNILER LQQELVHNVA LRVEETDSPD 
RFRVSGRGEL HLSILIENMR REGYELAVSR PEVIVKEIDG EMCEPFETLT VDVQEEHQGA 
VIEKLGIRKG DMKDMQLDGK GRVRIDFVIP SRGLIGFQTE FMTATSGTGL IYHSFDHYGP 
LKGGDIGQRA RGVLISNATG KALTFALFGL QERGRLFITH ATEVYEGQVV GLHARANDLT 
VNCLKGKQLT NMRASGTDEA QVLTPHIEMT LEQALEFIDD DELVEVTPLN IRVRKRFLTE 
NERKRHNRK