Gene Spea_3906 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSpea_3906 
Symbol 
ID5664290 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella pealeana ATCC 700345 
KingdomBacteria 
Replicon accessionNC_009901 
Strand- 
Start bp4752644 
End bp4753081 
Gene Length438 bp 
Protein Length145 aa 
Translation table11 
GC content47% 
IMG OID641238570 
ProductD-tyrosyl-tRNA(Tyr) deacylase 
Protein accessionYP_001503751 
Protein GI157963717 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG1490] D-Tyr-tRNAtyr deacylase 
TIGRFAM ID[TIGR00256] D-tyrosyl-tRNA(Tyr) deacylase 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.0328589 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGATAGCCC TTATTCAACG TGTGAGTGAA GCAAAAGTTG TCGTTGATGG CGCGACTATC 
GGTGAGATCG ATAAAGGTCT GTTGGTGTTA CTCGGTGTTG AGCGCGAGGA TAACATTGAA 
AAGATGCAAA AGTTGGCCAC TAAGGTGATG AGTTACCGTG TGTTTTCCGA TGAGAATGGC 
AAGATGAATC TTAACCTTGA GCAAGCGGGT GGCAGCTTAC TTGTGGTCTC GCAATTTACC 
TTGGCAGCCG ATACTGGCCG AGGCTTACGC CCAAGCTTTT CAGGCGCCGG CACACCAGAT 
CAAGCCCGTG AACTTTATGA AGCCTTTGTC GATTTTTGTA AATCAAAAGG GGTCAACACC 
CAAACCGGTC AATTTGCCGC AGATATGAAA GTGTCTTTAG TTAACGACGG CCCAGTGACT 
TTTAATTTGC AGGTTTAG
 
Protein sequence
MIALIQRVSE AKVVVDGATI GEIDKGLLVL LGVEREDNIE KMQKLATKVM SYRVFSDENG 
KMNLNLEQAG GSLLVVSQFT LAADTGRGLR PSFSGAGTPD QARELYEAFV DFCKSKGVNT 
QTGQFAADMK VSLVNDGPVT FNLQV