| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_3883 |
|---|
| Symbol | |
|---|
| ID | 5664267 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella pealeana ATCC 700345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009901 |
|---|
| Strand | + |
|---|
| Start bp | 4729636 |
|---|
| End bp | 4730559 |
|---|
| Gene Length | 924 bp |
|---|
| Protein Length | 307 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 641238547 |
|---|
| Product | CaCA family Na(+)/Ca(+) antiporter |
|---|
| Protein accession | YP_001503728 |
|---|
| Protein GI | 157963694 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0530] Ca2+/Na+ antiporter |
|---|
| TIGRFAM ID | [TIGR00367] K+-dependent Na+/Ca+ exchanger related-protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.150856 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTTATTT TATTGTCGAT ACTCGGCGGC TTTTTAATTC TGACCATAGG CGCAGAAGCC
TTAGTTAGAG GTGCAAGCCA AATCGCACTT AGATTGGGGC TTACGCCTCT TATCATCGGC
CTAACAATCG TTGCCTTTGG TACCAGTGCT CCTGAACTTG CGGTTAGCGT AAAATCAGCA
ATTGCAGGCA ATAGCGGCAT CGCCTTAGGT AACGTGATTG GCTCAAACAT CGCCAACATC
GGCCTGATTT TAGGTATCAC AGCGCTTATT CGCCCGATTA AGATCGAGTC ACAAATGGTA
CGCCGTGATA TTCCAATCAT GATTGGTGCA TCGCTACTGT TCTGGAGCCT GCTACTTGAT
GGCGGCTTAA GCTTCTGGGA TGGCGCAATT CTATTTGCAC TACTTGTGGC TTACTTAACC
TTTAGCTATT TCACTGCCGA AAAGCAGACT GACGATGATG TAGAAGATAC CAAGCAAAAC
CCTATGCTAT CTGTGCTATT TATCGTTATC GGTATCAGCA TGCTAGTGGG CGGCGGGATC
TTATTCGTTG ATGGCGCAGT GGCTATGGCG AAATCATTCG GCATTAGCGA AGTGATTATC
GGCCTAACTA TCGTGGCTAT CGGTACCAGC ATGCCAGAAC TTGTTACCTC GGTTGTGGCA
GCGCTTAAAG GTCAGAGCGA TATCGCGATT GGTAACGTGG TTGGCTCAAA CCTGTTCAAT
ATTCTAGGTA TTTTGGGCGT TACCGCACTT ATCCACCCGA TTGTTGGCAG CGAAATTAGT
ACGCTAGACT GGATTTCAAT GATTGCCTTT GCAATGATCT TACTGCCGTT TGCCTACACG
GGTTTACGCA TCGGTCGCCG TGAAGCAGCT CTGTTAGTAC TAGGTTACCT AGTGTACATT
GGCTACCTGG TTGCTCAAGT TTAA
|
|---|
| Protein sequence | MFILLSILGG FLILTIGAEA LVRGASQIAL RLGLTPLIIG LTIVAFGTSA PELAVSVKSA
IAGNSGIALG NVIGSNIANI GLILGITALI RPIKIESQMV RRDIPIMIGA SLLFWSLLLD
GGLSFWDGAI LFALLVAYLT FSYFTAEKQT DDDVEDTKQN PMLSVLFIVI GISMLVGGGI
LFVDGAVAMA KSFGISEVII GLTIVAIGTS MPELVTSVVA ALKGQSDIAI GNVVGSNLFN
ILGILGVTAL IHPIVGSEIS TLDWISMIAF AMILLPFAYT GLRIGRREAA LLVLGYLVYI
GYLVAQV
|
|---|
| |