| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_3857 |
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| Symbol | |
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| ID | 5664241 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | + |
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| Start bp | 4686977 |
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| End bp | 4688623 |
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| Gene Length | 1647 bp |
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| Protein Length | 548 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 641238521 |
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| Product | putative transporter |
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| Protein accession | YP_001503702 |
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| Protein GI | 157963668 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1292] Choline-glycine betaine transporter |
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| TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.187176 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTGGCTTA CACCCAAGCG TAAGCCGCAT TACTACTTTT GTAAGGATGT AGTTGTGACT
GATATAACAA CGACCCCGGT GACAGATGAA ACTGTTACTC AGCAATCCCC AGTTCAAAAT
GATAAAGTTC AAAACGACAA ACTGCTGATC TCTGTGAGTT TGGCTGTTGT ATTTGCTGTT
GTAATGATGC TGATCTTCAA TCCAGATCAG GTACAAGCTG CCGGCAAAAC AGCCTTTGCT
GCATTAACCA ATACATTTGG CTCTTTCATC CAGCTATTTG CCTTTGCCTC TGTGTGTACC
ATGTTGTACA TCGCAGTAAG CCGCTACGGC ACCATTAAGT TAGGCGAAGG CCAGCCTGAA
TACAGCAACA TGAGCTGGTT GTTCATGTTT ATCTGTGCCG GTTTAGGTTC GGCGACCATG
TACTGGGCGT TTATGGAGTG GGCTTACTAC TACAACGGTA TTGGTCTAAA CATTGAAGGC
CAAACCAACG AAGCACTGCG TACTAGCTTG TCTTACGTGA TGTTCCATTG GGGTATTACG
CCTTGGGCTA TCTACGGTCT AGCGTCTATC ACTATGGCGT ACCACTTCCA CGTTAACCGT
GCTAAAGGTC TTAACCTGTC ATCGCTAATG GTATCTATCC TTGGCATGAA AGAAGACAGC
ACTGCTAGCC GTGTTATGGG GCGCTCACTG GATCTTATCT TCCTATTCGC AACGTTTGGC
GGTCTGATCC TAACGACTAC CGTAACAGTG AACACAGTTT CAACTGGTTT CGCTGAGCTG
TTCGGCATGG AAAATACCTT CGCAATTAAG GCTATCCTGC TGGCGCTGAT CACCCTTACC
TTCACCCTAA GCTCTTATAT CGGTATTGCT GAAGGTCTGC AAAAAATCGC TCATGCCGCT
TGTGGTATGT GCTTTGTGTT TGCTGTGGTT GTACTAGTTC TTGGCGACAC AGGCTTTATC
GTTGATTTCT TTGTTAACTC ACTAGGCTTA ACCCTGAGCA ACTTCGTTGA GATGAGTCTG
TTCACCGACG CAACTAATGA AGGCACCTTC AACAAAGATT GGACTGTGTT CTACTGGTTA
TACTGGTTCA CTTACACACC TGCGGTAGCG ATTTTCGTAA CTCGTATCTC TAAGGGTCGT
ACTATTCGCC AGGTGATTTT AGGTCTGATT GCGGGTGGTT GTGGTGGTTG TTGGTTCTTC
TTTGGCGCTC TAACGGGTTA CTCTGTTGAC GCTATGGTCG ATGGTGTTGT GAATGCACCT
GCGCTACTAA ACAGCGCTAC TGGTGACATC GCAGTGGCCC AGCTAATTGC TAACCTGCCA
TTTGGTACCA TCTTGTCAGT GTTCTACTTC GTGCTAATGA TGTTATTCCT AGCTTCTCAC
TTAGATGCTA CAGCCTTCAC CGTAGCAGCA GTAAGCACCA AGAACCTAAA ACAAGGTCAA
GATCCGACTC GTGAACTACG CGTGTTCTGG TGTGTGATGC TAAGTCTATT ACCACTAGCC
ATGTTGTACA TCAACGCGTC ACTAGACACC TTGAAAACAG CGGTAACCCT AACTGCTGCA
CCATTTGTAA TCGTACTGAT GCTATGTATG TTCGGCTTAA AGAAATTCCT GTCAAACCAC
AAGTTTGACA ACGTTTCAGA GAAATAA
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| Protein sequence | MWLTPKRKPH YYFCKDVVVT DITTTPVTDE TVTQQSPVQN DKVQNDKLLI SVSLAVVFAV
VMMLIFNPDQ VQAAGKTAFA ALTNTFGSFI QLFAFASVCT MLYIAVSRYG TIKLGEGQPE
YSNMSWLFMF ICAGLGSATM YWAFMEWAYY YNGIGLNIEG QTNEALRTSL SYVMFHWGIT
PWAIYGLASI TMAYHFHVNR AKGLNLSSLM VSILGMKEDS TASRVMGRSL DLIFLFATFG
GLILTTTVTV NTVSTGFAEL FGMENTFAIK AILLALITLT FTLSSYIGIA EGLQKIAHAA
CGMCFVFAVV VLVLGDTGFI VDFFVNSLGL TLSNFVEMSL FTDATNEGTF NKDWTVFYWL
YWFTYTPAVA IFVTRISKGR TIRQVILGLI AGGCGGCWFF FGALTGYSVD AMVDGVVNAP
ALLNSATGDI AVAQLIANLP FGTILSVFYF VLMMLFLASH LDATAFTVAA VSTKNLKQGQ
DPTRELRVFW CVMLSLLPLA MLYINASLDT LKTAVTLTAA PFVIVLMLCM FGLKKFLSNH
KFDNVSEK
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