Gene Spea_3853 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSpea_3853 
Symbol 
ID5664237 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella pealeana ATCC 700345 
KingdomBacteria 
Replicon accessionNC_009901 
Strand- 
Start bp4683269 
End bp4683919 
Gene Length651 bp 
Protein Length216 aa 
Translation table11 
GC content46% 
IMG OID641238517 
ProductGntR family transcriptional regulator 
Protein accessionYP_001503698 
Protein GI157963664 
COG category[K] Transcription 
COG ID[COG1802] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones4 
Plasmid unclonability p-value0.00000435819 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAATCA CCAAAGAAAG TTTAGAGTCT CAAGCCATCC GTTATCTGCG AACGCATATA 
TTAGAAGGCC ACATCAAGTT AGGCGAAAAG CTGGTGGAAA GTGCGTTAGC TAAGCAGTTA 
GAGTTATCGC GCAGCACTGT GCGTATGGCA CTAAATTCGT TAGTGAACGA AGGCTTAGTG 
ATCCAAAAGC CTTATTCAGG CTGGCAAGTG GTTGAGATTA ACGAGCAAGA CTTGTGGGAG 
TTATATCATT TACGCGTCGC CCTAGAAGGC GAAGCCGCCG CGATGGCAGC CAAGTGGGCC 
AGTAAAACAG ACAAAACCCG TTTAGCCGAT TTTTTTCAAG AATATCAATT GCTGTGTTTA 
CAACACAGTG ATGACACCCG CCGCATTAGC GAAATGGACT GGCAATTACA CCAGTTGATC 
ATTGAGATCT GCGGCAGTGT GCGCATGCAA AGCCAATATA AGCAGATCTT ATATCCATTG 
CAGGCATATA TTGCGCTTAC CCACCAAGAT TATGATCTGT CTGACAGTGC CTCAAGTCAC 
CAAGCACTCG TGCAAGCTAT CTGTTCCGGT GACGCCGAAA CCGCTTTTGA ACAAGCACGA 
GCCAATATTA CGCCGATGAC GCGTGGTGGT GAACTGTCAG AAAGTAATTG A
 
Protein sequence
MKITKESLES QAIRYLRTHI LEGHIKLGEK LVESALAKQL ELSRSTVRMA LNSLVNEGLV 
IQKPYSGWQV VEINEQDLWE LYHLRVALEG EAAAMAAKWA SKTDKTRLAD FFQEYQLLCL 
QHSDDTRRIS EMDWQLHQLI IEICGSVRMQ SQYKQILYPL QAYIALTHQD YDLSDSASSH 
QALVQAICSG DAETAFEQAR ANITPMTRGG ELSESN