Gene Spea_3837 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSpea_3837 
SymbolradC 
ID5664221 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella pealeana ATCC 700345 
KingdomBacteria 
Replicon accessionNC_009901 
Strand
Start bp4664069 
End bp4664746 
Gene Length678 bp 
Protein Length225 aa 
Translation table11 
GC content42% 
IMG OID641238501 
ProductDNA repair protein RadC 
Protein accessionYP_001503682 
Protein GI157963648 
COG category[L] Replication, recombination and repair 
COG ID[COG2003] DNA repair proteins 
TIGRFAM ID[TIGR00608] DNA repair protein radc 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00013144 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCGATAA AGGATTGGCC AGAAGGCGAG GCGCCGCGAG AAAAATTGTT GAGCCAAGGG 
GTAAAACAAT TATCGGATGC CGAATTATTA GCTGTTCTGC TTAGAGTGGG TTTAAAAGGA
TTAAGTGCTG TAGAGCTGGC TCGAATCATG ATAAATGAGT TTGGTGGACT TAGAAGCTTG
CTTAATGCGT CTCAGGCACA AGTTTGTCGA TTAGATGGAA TTGGGCCGGT AAAATTTGCT
CAAATGCAGG CCGCAGTGGA ATTAGGTGCA CGAATTTCGC AAGAAAACCT AAAAAGAGGT
AAAATTTTAT CGGATCCTGA TTTAACTCGG GACTATTTAA TGAGACAATT GTCTGATCGT
GCCTATGAGG TGTTCGCTAT TTTATTGTTA GATAGTCAAC ATAGGGTAAT TCAATTCGTT
GAATTATTTA GAGGCACAAT AAATTCAGCG TCAGTTTATC CACGAGAAGT GGTAAGTTTG
GTGCTTGAAA AAAAGGCTGC GGCTGTGATC GTGTGTCACA ATCATCCTTC TGGAATTGCA
GAACCAAGTA CAGCCGATAG ACGAATTACT GAGCGGTTGA AGCAAGCCCT ACAAACTATT
GATGTTTCCT TACTGGATCA CATGGTTGTG GGCGATCGAG AGATAGTTTC TTTCGCTGAA
AGGGGATGGA TTGATTAA
 
Protein sequence
MAIKDWPEGE APREKLLSQG VKQLSDAELL AVLLRVGLKG LSAVELARIM INEFGGLRSL 
LNASQAQVCR LDGIGPVKFA QMQAAVELGA RISQENLKRG KILSDPDLTR DYLMRQLSDR
AYEVFAILLL DSQHRVIQFV ELFRGTINSA SVYPREVVSL VLEKKAAAVI VCHNHPSGIA
EPSTADRRIT ERLKQALQTI DVSLLDHMVV GDREIVSFAE RGWID