Gene Spea_3813 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSpea_3813 
SymbolmurD 
ID5664197 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella pealeana ATCC 700345 
KingdomBacteria 
Replicon accessionNC_009901 
Strand
Start bp4636211 
End bp4637530 
Gene Length1320 bp 
Protein Length439 aa 
Translation table11 
GC content49% 
IMG OID641238477 
ProductUDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 
Protein accessionYP_001503658 
Protein GI157963624 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0771] UDP-N-acetylmuramoylalanine-D-glutamate ligase 
TIGRFAM ID[TIGR01087] UDP-N-acetylmuramoylalanine--D-glutamate ligase 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCGCAGC AATATTCACA CATAGTTTTA GGTTTAGGTG CGACAGGTTT GTCTGTTGTA 
CGTTACCTGT GTGCGCAAGG GATAGTTCCT TTAGTCATGG ACAGCCGAGC TCAGCCTCCG
GGAGCTGATA GCTTGGCGAC AGAGTTTCCT CAAGTTGAGC TAGTCACTGG TGGTTTTGAT
TGTCGCTATC TAGTACAGGC ACAGCAGATT GTCATTAGTC CTGGTATCGC CTGCGAAACG
CCAGAAGTGC GAGTCGCATT TGATATGGGG ATTGAAGTGA TTGGCGATGT TGAGCTATTT
GCACGGGCAG TCGCGCAAAC CTCAGCCAAG GTCATAGGTA TTACTGGCTC AAATGGTAAG
ACAACTGTCA CGACCTTAGT CGGTGAGATG GCTAAGGCTA GCGGCAGCTC TTACGCCGTG
GGTGGCAACA TTGGTGTGCC AGCTCTTGAC CTATTGCTCG AACCTAAAGA TCTGTATGTC
CTCGAGTTGT CGAGTTTTCA GTTAGAGACA ACCTATAGCT TGCAGTGTGT TGCGGCGACT
TGTCTTAACA TTAGCGAAGA TCATATGGAT CGCTATAGCG ATCTTGAGTC TTATCGTCAG
GCGAAGCTTA AGTTATACGA GCAGAGCAAG ATGGCGGTGT TTAATCGTGA AGACACGTTA
ACGCTACCGA ACAACCCGAC TAACCAACAA AGCTTTGGTT TAGATGCGCC AGAGGGCGAT
GATTGGGGCG TTTCGGGCGG CATGATAGTG CAAGGTAGTA GCCAGATCAT GCCGATTAGC
GATGTCGCAC TCGTAGGGAG CCACAACCTT GCCAATATTA TTGCAGCGAT GGCATTGACC
ACTGCGGCGG GGATTAAACG TGAGTGTCAG ATTGAGGTGG CTAAGACGTT TTTAGGCCTT
GCTCATCGCT GTGAAGTGGT TGCAGATATT GATGGCGTCA CTTATGTCAA CGACTCGAAG
GCCACGAATA TCGGCGCTAC AGTCGCTGCT ATTGATGGTT TGAGTGAGCA CTTAGGTGAA
TTGATCTTGA TCGCAGGTGG CGATGGCAAA GGGGCTGACT TTAAACCGTT AGAGCCCGTG
CTTGAGAAGG TGAGTCAGCT AATCGTTTTA GGTAAAGATG GCGACAAAAT CGCAGGGTTG
AAACCGGAGG CGATAAAAGT CGCCAATATG GTTGAAGCGG TAGCAAAAGC GCATGAGCTA
GCTACAGCAG GTGATATTGT TATTCTGTCA CCGGCTTGTT CAAGCTTAGA TATGTACCCC
AACTTTATGG CTCGTGGAGA TGAATTCCGT AGCCTGGTTG AAGCGCTTCA TGGCGAGTAG
 
Protein sequence
MAQQYSHIVL GLGATGLSVV RYLCAQGIVP LVMDSRAQPP GADSLATEFP QVELVTGGFD 
CRYLVQAQQI VISPGIACET PEVRVAFDMG IEVIGDVELF ARAVAQTSAK VIGITGSNGK
TTVTTLVGEM AKASGSSYAV GGNIGVPALD LLLEPKDLYV LELSSFQLET TYSLQCVAAT
CLNISEDHMD RYSDLESYRQ AKLKLYEQSK MAVFNREDTL TLPNNPTNQQ SFGLDAPEGD
DWGVSGGMIV QGSSQIMPIS DVALVGSHNL ANIIAAMALT TAAGIKRECQ IEVAKTFLGL
AHRCEVVADI DGVTYVNDSK ATNIGATVAA IDGLSEHLGE LILIAGGDGK GADFKPLEPV
LEKVSQLIVL GKDGDKIAGL KPEAIKVANM VEAVAKAHEL ATAGDIVILS PACSSLDMYP
NFMARGDEFR SLVEALHGE