| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_3800 |
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| Symbol | |
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| ID | 5664185 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | + |
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| Start bp | 4613182 |
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| End bp | 4615047 |
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| Gene Length | 1866 bp |
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| Protein Length | 621 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 641238460 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_001503646 |
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| Protein GI | 157963612 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGGCCA AGCTTCTGCA ACTTGTCCTT ACCACATTAT TGCTATTCTC TGGCTTAGTA
ACAGCTGGAG ACCCCCTCAT TATTACTAAG CATAGCGACG ACAAAATTGA GCTAACATCC
CAACTCTATA TTACCCATGT GAATGCCACT ATCGAACGGC TCGTGAACCC AGCCGTTCGA
TGGCAAAAAT ATGAACCAAA AGCGATGCTG GGCATTGGAG AAAAAGCCTA TTGGGTTAGG
TTATCCCTTA GCTATGAATC AGGTGTTTCT AGGCAGCAAA TTATATCTAT CGCAAATCCA
CATTTAGATC ATATCGAGTT TTATCACTTC AGTGGCCCTA CGCTGCTTAA ACAATTACGA
GCAGGCGACA GTTTGCCTTT CAACCAAAGG CCTATTATAA GCACTCATTT TCTGTACTCG
TTTAATAACC ACCAACAAGA TAGCCATGAT TTCTATTTGC GAGTGAAAAC GTCCGGAACA
TTTAGCATAC CGATGACCCT CTGGACTATC GATTCCTACT ACCAAAATGC CGAACGACAT
TCGGTCTTTT ATGGTTTTCA GATTGGCGTG TTAATAGCCA TTGGTATCTT TAGCCTGTTA
ATCGCTGTGA CTTCTCATTC ATTCAGTTAT AGCTATTATG CTGGTTTTGT ACTCTCCATT
ACCCTTTTTG TTGCGAGCTT ACACGGATTA GCATTTAGGT TTATCTGGCC AAATTTTCCG
AGCGTGCAAG AGTTTGCTTT GCCAGCCCTA CTGAGCCTAT CTATGATGTT TGCCTTCTTG
TTCTCAGAGA AGGCAATGCA CCTTAAGTAC CACAATCAGA CTATGCTGCG ACTCTGTCGA
GCTAGTGCCG CAATGTCTTT AGTGCTGCTT TTAAGCGGGT TATTACTCAA CTACTCAACT
GCGTTAACGA TCAATATTTA CGCGGTAATG CTTTCCAGCA TATTATTAAT GTGCATGTCT
CTCGCCCAAG CTTTCAAAGG CAATAAGCTA GCAAAGTTCT TTGCTATAGG CTGGGCAGGT
ATGATGTTAG GGGCATTGAT ATCTGGTGCT ATATATCTAG GTTTGCTTCA CTGGGACCTT
CAAGCTAAAA CTCCTTTTAT GATTGGCCTA AGTTTAGAGG TTGTTTTTAT GGCAGCCCTA
CTCGCGATCC GCTATAACGA TGAACGCCTA AATAAATTAA AAATACAGAA AGACGCACTC
ATTCAAGCAA ATAAAGCACA GGAGACCAAA GAAGAGGCGT TACGCATCGA AGCTAGAAGT
AGCGAAAAGT TATCTCAAAT GGTTCAAGAA CGCACCCTAG AACTAGAGAT TGCCCTACGA
GAACTCAATG AGGCAAATCA GAAACTCACC GAACAGACAA GAGTAGACAG CCTGACAGGC
GTTAAAAATC GCGCCTCATT CGATAAACGT ATCATGGCCG AAGGTCGAAT TAGTCGAAGA
CAGCAGACCC CATTATCAAT TTTAATGCTG GATATCGATC GCTTTAAATT AATTAATGAC
TCCTATGGCC ACCTAGCTGG CGATCAAGCT TTACGCGTAA TCGCCGATAA ATTAAAAGAA
ACTTTAAAGC GACCAACCGA TCTAGTGTCA CGTTTTGGCG GAGAGGAGTT TGCTATTATA
TTACCCAACA CTGATAAAAT AGGTGCACAG CAAGTAGCTG AGACGTTAAG GAAAGTTATC
TGCGAACTGC CTATTAGTTG GGGGGAAGAC AGTATCCCTC TAACAGTTAG TATTGGGGTG
AGTAGCGAAA TTATTACCTC AGAAGAACAT ACTACTTTAT TATTAGAACA AGCAGATAAA
GCACTTTATC AAGCAAAGAA TGACGGGCGT AACCGAGTAA GACTCTACAG CCCCGATCAA
GATTAA
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| Protein sequence | MKAKLLQLVL TTLLLFSGLV TAGDPLIITK HSDDKIELTS QLYITHVNAT IERLVNPAVR
WQKYEPKAML GIGEKAYWVR LSLSYESGVS RQQIISIANP HLDHIEFYHF SGPTLLKQLR
AGDSLPFNQR PIISTHFLYS FNNHQQDSHD FYLRVKTSGT FSIPMTLWTI DSYYQNAERH
SVFYGFQIGV LIAIGIFSLL IAVTSHSFSY SYYAGFVLSI TLFVASLHGL AFRFIWPNFP
SVQEFALPAL LSLSMMFAFL FSEKAMHLKY HNQTMLRLCR ASAAMSLVLL LSGLLLNYST
ALTINIYAVM LSSILLMCMS LAQAFKGNKL AKFFAIGWAG MMLGALISGA IYLGLLHWDL
QAKTPFMIGL SLEVVFMAAL LAIRYNDERL NKLKIQKDAL IQANKAQETK EEALRIEARS
SEKLSQMVQE RTLELEIALR ELNEANQKLT EQTRVDSLTG VKNRASFDKR IMAEGRISRR
QQTPLSILML DIDRFKLIND SYGHLAGDQA LRVIADKLKE TLKRPTDLVS RFGGEEFAII
LPNTDKIGAQ QVAETLRKVI CELPISWGED SIPLTVSIGV SSEIITSEEH TTLLLEQADK
ALYQAKNDGR NRVRLYSPDQ D
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