| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_3768 |
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| Symbol | |
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| ID | 5664153 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | - |
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| Start bp | 4581935 |
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| End bp | 4583605 |
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| Gene Length | 1671 bp |
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| Protein Length | 556 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 641238428 |
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| Product | pilus (MSHA type) biogenesis protein MshL |
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| Protein accession | YP_001503614 |
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| Protein GI | 157963580 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02519] pilus (MSHA type) biogenesis protein MshL |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGCTCAA TGACCTATAT CACCCCTTTG CTGTCTTTAT GTTTAGTGGC CTGCCAAACC
GTCGACAGAC CCAATCCTGT AGAGTCTAAG CAAGCTCTGG CAGAATCTCT AACGACTAAA
GAAGTGGCTG CTGTGACGCC ACCGCCAGCA GTGATGCCCG ATGATGTTCA ACGTGAACTG
TCATCAAACA ATTTGTTAGA AGGCTTTGCC CCAGCAAGAC CCAGCGAACG TCGCTTCGAT
GTGTCAGCTA ATAATGTCGA TGCTAAAGTA TTCTTCCCAA GCCTTGCTCA AGGTACCCCC
TTAAGTGTCG CTGTGCATCC AGACGTGACA GGCAAGATCT CGCTGTCATT AAAGAGCGTG
ACCTTAAAAG AAGCACTACA AGTTGTAGAA GATATTTACG GCTATGAAGT GAGCCGCGAA
GGACGCATAT TGCGTATTTT CCCTGCAGGT ATGCGCACAG AAACGTTCTC GTTAAATTAC
CTGTATATGG AGCGTCAAGG GCTGTCTTTG ACTTCGGTGA ACTCTGGTCG TATTTCAGAT
AATAACTCCA ACTCTGGTAG CAATAGTAAT AGCAACAGTA ATAATAATTT CAACGATTCA
TCGAACTCGA GTTCTAGCTC TGATAGCAGC AATAGCAACG AGCAAACCAA CGGCACCTTT
ATTCGCTCTA AGACCAAGTC TGATTTCTGG GGTGAATTAA AAGAGACCTT GGTGTCTATC
GTGGGGAACA CCGGCGGTGG ACGCCAAGTG GTAGTGACTC CTCAAGCCGG TCTAGTGACC
ATTAGGGCTT ACCCTAACGA GATCAGACAG GTTCGAAGCT TTATCAAGAC CGCGGAAAGT
CATCTGCAGC GCCAAGTTAT CTTAGAAGCC AAAGTGCTCG AGGTGACCCT ATCTGACGGC
TACCAGCAAG GCATTCACTG GGAAAGTGTA TTAGGTCACG CAGGTAGTAC CGATATTAGC
TTTGGCACCA GCCCTGCAGC AGGGCTTGGG GACACCATTA CTAATGCTTT GGGCGGAGTG
ACCTCAATTA AGCTAGAGGG CTCAGATTTT AGCACCATGA TAAGCCTGCT CGATACTCAG
GGTGATGTTG ATGTGTTATC TAGTCCGCGT GTCACAGCGT CGAATAACCA AAAAGCGGTC
ATAAAAGTCG GTACAGACGA GTACTTTGTT ACAGACGTTT CTTCAACTAC AGTGGCAGGT
AATACGCCTG TGACGACCCC TGAGGTTGAA CTGACTCCTT TCTTCTCTGG CATAGCCTTA
GATGTGACGC CACAGATTGA TGAGCAGGGC AACGTGCTAC TGCATATTCA CCCATCGGTG
ATCGATATTA AAGAGCAGGT AAAGAGCATT AAGATCGCAG ATAGCACGCT TGAGCTACCA
CTAGCACAGA GTGAGATCCG TGAGTCAGAC ACTGTGATAA AGGCCGCGAG CGGTGATGTT
GTGGTGATTG GTGGTTTGAT GAAGAGTGAA AATATTGAAC TGGTTTCTAA GGTTCCGCTA
CTGGGTGATA TTCCATTCCT AGGTGAGGCC TTTACTAACC GTGCCAATTC GACGGTTAAA
ACCGAGTTAG TGATCTTGCT TAAACCAATC GTTGTCGGTG CCAATACTTG GGAGAACGAA
CTTAAGCGTT CTCAAGAGCT ACTAGAACGC TGGTATCCAG AGGAGCAGTA A
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| Protein sequence | MRSMTYITPL LSLCLVACQT VDRPNPVESK QALAESLTTK EVAAVTPPPA VMPDDVQREL
SSNNLLEGFA PARPSERRFD VSANNVDAKV FFPSLAQGTP LSVAVHPDVT GKISLSLKSV
TLKEALQVVE DIYGYEVSRE GRILRIFPAG MRTETFSLNY LYMERQGLSL TSVNSGRISD
NNSNSGSNSN SNSNNNFNDS SNSSSSSDSS NSNEQTNGTF IRSKTKSDFW GELKETLVSI
VGNTGGGRQV VVTPQAGLVT IRAYPNEIRQ VRSFIKTAES HLQRQVILEA KVLEVTLSDG
YQQGIHWESV LGHAGSTDIS FGTSPAAGLG DTITNALGGV TSIKLEGSDF STMISLLDTQ
GDVDVLSSPR VTASNNQKAV IKVGTDEYFV TDVSSTTVAG NTPVTTPEVE LTPFFSGIAL
DVTPQIDEQG NVLLHIHPSV IDIKEQVKSI KIADSTLELP LAQSEIRESD TVIKAASGDV
VVIGGLMKSE NIELVSKVPL LGDIPFLGEA FTNRANSTVK TELVILLKPI VVGANTWENE
LKRSQELLER WYPEEQ
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