| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_3767 |
|---|
| Symbol | |
|---|
| ID | 5664152 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella pealeana ATCC 700345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009901 |
|---|
| Strand | - |
|---|
| Start bp | 4581024 |
|---|
| End bp | 4581932 |
|---|
| Gene Length | 909 bp |
|---|
| Protein Length | 302 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 641238427 |
|---|
| Product | MSHA biogenesis protein MshM |
|---|
| Protein accession | YP_001503613 |
|---|
| Protein GI | 157963579 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3267] Type II secretory pathway, component ExeA (predicted ATPase) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGTATCTGC AGCATTTTGG ATTAACTGAA ACCCCGTTTT CGCTTACGCC GAATACGGGA
TTTTTCTTTG GTCTCGCGCC GCACGTCGAA GCCTTACAAG TGCTGCAAAC GGCGCTGCAA
ACTGGCGAAG GCTTTATCAA GGTTACCGGG GAGGTCGGCA CGGGTAAGAC GCTCATCTGT
CGTAAATTGA TGAATGATCT GCCTGAGCGC TTTCATTGTG CCTATCTGCC TAACCCGTAC
CTCACTCCTG ATGAGCTACG CTGGGCGGTG GCGATGGAGC TGGGGCTAAA GCATTCAAGT
CAAATTAACC AGCAACAGTT AACAGGCCTT ATTCAGCAGC AACTTTTAGC CTTAAGTGCA
CATGGGCACT CTATTATCTT AGTGCTAGAT GAGGCGCAAG CGCTACCCGA TGATAGTCTT
GAAGCCTTAC GTCTGTTTAC TAACTTAGAA ACAGAGAGCC GTAAATTACT TCAGGTCGTC
CTATTCGCTC AGCCAGAGCT TGACGAGCGT TTAGCGCAGA GTAAGTTTAG GCAGTTAAGA
CAGCGGATCA CCTTTAGCTA TTGTTTACGT CCGTTAACTG TTGAGGAGTC TATGGCTTAT
ATTCAGCATC GTTTAACTGT TGCTGGCAGC TCGAGTGGAC GCTTATTTAG TGACTCTAAC
GCTAAGCGAA TAGCTAGAGC AGCGAGAGGG ATCCCAAGGC TGATTAACGT GTTATCTCAT
AAAGCCCTGC TTGTAGGTTT TGGTGAAGGG GCTAAAACCA TTGAGCCTAA TCATGTCGAT
GCTGCTATTG CCGATACGGG GGATGCCCTG AAGCATCAAT ATGGCATGGT TAAGTGGTCA
GTGGCCACTA TGGTCATTAT TGGCAGCGGT TTAGCTGTAT TTTACTGGTT TAAAGGAGGC
GTTGCATGA
|
|---|
| Protein sequence | MYLQHFGLTE TPFSLTPNTG FFFGLAPHVE ALQVLQTALQ TGEGFIKVTG EVGTGKTLIC
RKLMNDLPER FHCAYLPNPY LTPDELRWAV AMELGLKHSS QINQQQLTGL IQQQLLALSA
HGHSIILVLD EAQALPDDSL EALRLFTNLE TESRKLLQVV LFAQPELDER LAQSKFRQLR
QRITFSYCLR PLTVEESMAY IQHRLTVAGS SSGRLFSDSN AKRIARAARG IPRLINVLSH
KALLVGFGEG AKTIEPNHVD AAIADTGDAL KHQYGMVKWS VATMVIIGSG LAVFYWFKGG
VA
|
|---|
| |