Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Spea_3765 |
Symbol | |
ID | 5664150 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella pealeana ATCC 700345 |
Kingdom | Bacteria |
Replicon accession | NC_009901 |
Strand | - |
Start bp | 4578008 |
End bp | 4579741 |
Gene Length | 1734 bp |
Protein Length | 577 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 641238425 |
Product | type II secretion system protein E |
Protein accession | YP_001503611 |
Protein GI | 157963577 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.238087 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGAAACCCA AGTTAAAGAT GCGACTCGGT GATCTGCTTG TTCAAGAGCA GATCATCTCT GAAGAGCAGT TACAGCAAGC GTTAGGCGAA CAGCGTAATA CGGGAAAGAA GCTTGGTCGT ACATTAATCG ACTTGTCATG TATTACTGAG CAGCAATTAC TACAATTTTT GTCGCATCAG CTTAACATTC CTTTTATCGA TATTAGTAAG CGTGCCATCG CTACTGAAGT CGTGAGTCTG CTACCTGAGG TGCAGGCTCG CCGTTATCGC GCTCTGGTTG TCGAAGATAA TGGTGAAGGC GTGCTGGTAG CCATGAGCGA TCCCGCCGAT CTACAGGCGA TGGATAATCT AGAGTTGCAG TTGGCACCTA AGAGTATCTC TATTGCTGTA GTGACAGAGC AGCAGCTATT AGATGCGTTT GATAATCTCT ATCGACGCAC CGATGAGATT GCTCAAATTG CAGGTAAGCT CGAAGAGGAA TACGCCGCCG ATGATCTGTT CGATCTCGGT AGCTTGACCG ATGGCGACAG TGATAACGAA ACCACAGTCG TTAAACTGCT ACAGTCTATC TTCGAAGATG CTGTGCAGAT GCGCGCTTCG GATATCCATA TTGAACCGGG TGAGAAAGCG CTGCGAATTC GTCAACGTAT CGACGGTCAG TTACATGAAA ACATCCTACC GGAAGTTAGC ATCGCAGCGG CGTTAGTATT GCGCTTAAAG TTGATGGCGG GCTTAGATAT TTCAGAGAAA CGATTGCCAC AAGATGGCCG TTTCCACATA GAGATTAAAG GGCATAAGAT TGACGTTCGT ATGTCGACCA TGCCGATTTA CCATGGTGAA TCTGTGGTGA TGCGTTTGCT GGACCAATCT GCTGGTCTAC TGACCTTGAA TGAAACTGGG ATGCCGCCAG AAATGTTGGC GAGGATCCGT CGGCAGATCA AGCGTCCTCA CGGCATGCTG TTAGTCACGG GCCCAACGGG TAGCGGTAAA ACCACTACGC TTTATGGCGT CTTGAGTGAG CTCAATACCG CAGATCGCAA GATCATCACA GTTGAAGATC CAGTTGAATA CCAGTTACCG CGTATTAATC AGGTGCAGGT AAACCATAAG ATTGGTCTCG ATTTTTCCAA TGTACTGCGA ACCACGTTAC GACAAGATCC CGACATCATC ATGGTCGGTG AGATGCGTGA CCAAGAGACG GTAGAAATTG GTCTTCGTGG CGCATTAACC GGTCACTTTG TATTATCGAC CTTGCATACC AACGATGCGG TGACCAGTGC CCTGCGTTTG CTAGACATGG GCGCGGCGAG TTATCTGGTT GCGAGCGCAC TTAGAGTCAT TATTGCTCAG CGCTTAGTGC GCCGAGTGTG CCAGAACTGC GCCATCGATT ATCAGCTTTC TGCCCCGGAT AAAGCCTGGC TATCTAGCGT GAGCAAGCTC GATTACTCGC AAGCGACATT TAGGATAGGT ACTGGCTGTC AGAGCTGTAA CGGCAGCGGT TATCGTGGTC GAATAGGTGT ATTTGAAATT TTAGAGCTCG ACGAACCAAT GATTGAGGCT ATGCGTACGG GCAACCCGCA GGACTTTACT CGCGCCGCTT ATCAGAGCCC TAACTTTACG CCGCTTGCAG AATCGGCATT AAAGTACCTA GCTCAAGGGA TGACAACAAT CGAAGAGGTC GCAAAACTCG TTGAAGATGT TAGTGACACT CAATTAGAAT TTGGTGAGGC TTAA
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Protein sequence | MKPKLKMRLG DLLVQEQIIS EEQLQQALGE QRNTGKKLGR TLIDLSCITE QQLLQFLSHQ LNIPFIDISK RAIATEVVSL LPEVQARRYR ALVVEDNGEG VLVAMSDPAD LQAMDNLELQ LAPKSISIAV VTEQQLLDAF DNLYRRTDEI AQIAGKLEEE YAADDLFDLG SLTDGDSDNE TTVVKLLQSI FEDAVQMRAS DIHIEPGEKA LRIRQRIDGQ LHENILPEVS IAAALVLRLK LMAGLDISEK RLPQDGRFHI EIKGHKIDVR MSTMPIYHGE SVVMRLLDQS AGLLTLNETG MPPEMLARIR RQIKRPHGML LVTGPTGSGK TTTLYGVLSE LNTADRKIIT VEDPVEYQLP RINQVQVNHK IGLDFSNVLR TTLRQDPDII MVGEMRDQET VEIGLRGALT GHFVLSTLHT NDAVTSALRL LDMGAASYLV ASALRVIIAQ RLVRRVCQNC AIDYQLSAPD KAWLSSVSKL DYSQATFRIG TGCQSCNGSG YRGRIGVFEI LELDEPMIEA MRTGNPQDFT RAAYQSPNFT PLAESALKYL AQGMTTIEEV AKLVEDVSDT QLEFGEA
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