Gene Spea_3764 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSpea_3764 
Symbol 
ID5664149 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella pealeana ATCC 700345 
KingdomBacteria 
Replicon accessionNC_009901 
Strand
Start bp4576785 
End bp4578005 
Gene Length1221 bp 
Protein Length406 aa 
Translation table11 
GC content48% 
IMG OID641238424 
Producttype II secretion system protein 
Protein accessionYP_001503610 
Protein GI157963576 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG1459] Type II secretory pathway, component PulF 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000373455 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCAACAT ATCAGTACCG CGGTCGAAGC GCTCAAGGTG AGCAGGTTAA GGGGCTAGTT 
GATGCAGCCT CTGAGAGTGC GGCTGCCGAT CAACTGATGT CTCGCGGGGT GATCCCGCTC
GAGCTCGTGT TAGCAAAAGA GGTTAAGGAG TTTAATCTTA AGACTTTATT TAAAGGTAAA
GTCGCGTTAG AAGAGTTACA GATCTTCACT CGGCAGATGT ACTCACTGAC ACGTTCAGGC
ATTCCCATCT TACGAGCGAT TGCAGGTCTT TCTGAGACGA CACATTCTGT TCGCATGAAA
GAGGCGCTCG ATGATATTTC TGAACAGTTG ACCTCTGGCC GTCCTCTATC TTCGGCGATG
AATCAGCATC CTGATGTATT TGATGCGCTG TTTGTCTCTA TGGTTCATGT AGGTGAAAAC
ACCGGTAAGC TTGAGGATGC ATTTATTCAG TTATCTGGTT ATATCGAGCG TGAGCAGGAG
ACTCGAAGAC GCATCAAAGC GGCGATGCGT TATCCGATCT TTGTATTAAT CGCGATCGCC
ATAGCCATGG TGATCCTCAA CATTATGGTG ATCCCTAAAT TTGCCGAGAT GTTTTCCCGA
TTTGGCGCGG ATCTTCCTTG GGCGACTAAA CTATTAATTA ATACCTCTAA TGTGTTTGTT
AACTACTGGC CTTTAATGCT CCTCGTGCTG GTGGCGGGAT TCGTTGGCAT TCGCTATTGG
CATAGCACCG AAAAAGGTGA GAAGCAGTGG GATAAATGGA AGTTAAATAT TCCCGCTGTT
GGTAGCATCA TCGAACGTTC AACCCTCTCG CGCTATTGCC GCAGTTTCTC AATGATGTTG
AGTGCGGGTG TACCCATGAC CCAAGCCCTT AGTCTTGTGG CGGACGCCGT CGATAATGCT
TATATGCACG ACAGCATAGT GGGGATGCGT CGTGGTATCG AGTCCGGTGA GTCGATGTTA
AGAGTATCGA ATAACAGCCA ATTATTTACG CCACTTGTGC TGCAGATGGT GGCAGTGGGT
GAAGAAACGG GCCAGATCGA TCAGTTGCTT AATGATGCTG CAGATTTTTA TGAAGGTGAA
GTCGATTACG ACCTGAAGAA TTTGACTGCC AAGCTAGAGC CTCTTTTGAT CGGTTTTGTC
GCCTGTATCG TGTTGGTGTT GGCGCTGGGT ATTTACCTAC CTATGTGGGA CATGTTGAAT
GTGGTTAAGG GCGGTAACTG A
 
Protein sequence
MPTYQYRGRS AQGEQVKGLV DAASESAAAD QLMSRGVIPL ELVLAKEVKE FNLKTLFKGK 
VALEELQIFT RQMYSLTRSG IPILRAIAGL SETTHSVRMK EALDDISEQL TSGRPLSSAM
NQHPDVFDAL FVSMVHVGEN TGKLEDAFIQ LSGYIEREQE TRRRIKAAMR YPIFVLIAIA
IAMVILNIMV IPKFAEMFSR FGADLPWATK LLINTSNVFV NYWPLMLLVL VAGFVGIRYW
HSTEKGEKQW DKWKLNIPAV GSIIERSTLS RYCRSFSMML SAGVPMTQAL SLVADAVDNA
YMHDSIVGMR RGIESGESML RVSNNSQLFT PLVLQMVAVG EETGQIDQLL NDAADFYEGE
VDYDLKNLTA KLEPLLIGFV ACIVLVLALG IYLPMWDMLN VVKGGN