Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Spea_3724 |
Symbol | |
ID | 5664109 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella pealeana ATCC 700345 |
Kingdom | Bacteria |
Replicon accession | NC_009901 |
Strand | + |
Start bp | 4530343 |
End bp | 4532085 |
Gene Length | 1743 bp |
Protein Length | 580 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 641238384 |
Product | diguanylate cyclase/phosphodiesterase |
Protein accession | YP_001503570 |
Protein GI | 157963536 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2200] FOG: EAL domain [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.0883602 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCCGCAA TCGATCTGCA ACTAGAACTC TCAAAGATCA TCGATAAAGA AAAAATCAAA GCGGTCTTTC AACCTATATG TAATATCTCT ACCCACCAAG TTCATGGTTT TGAAGCATTA AGCCGCGGAC CTGAGCATAG TCCACTATTT TCACCTGTAC CATTATTTAA AACGGCAGCT TACGAGGGAC GTCTATCTGA GCTTGAGACC CTCTGTCGAC GGATCTCCAT TCAACAGTTT AAAAACATCC AGCTGCCAGG CAAGCTATTC CTAAATATTT CACCTAAAGC GCTGTTAGAG CCTAATCATG CTAAAGGGCT CACCCTCAGC CTAGTACAAG AGCTCGGGTT ACATCCATCT CAGGTCGTTA TTGAGCTATC GGAGCAATAT CCTGCCGACG ATATCGATCT ACTCAAGTCC TGTCTCAACC ACTACCGTAG CCAAGGATTT CTCACGGCGA TCGATGACTT GGGAGCCGGA TATTCCGGTT TAAGGCTCTG GTCAGAATTA GCACCAGATT ATGTGAAGAT TGATCGTCAC TTTATCGAGT CGATAGATAG CTCGTCAGTG AAGCAAGAGT TTGTTCGCTC TATCATCAAT CTCTGTCAAA ACCTCAGCTG CAAGGTGATA GCCGAAGGCA TTGAGACTCA GGCAGAATTA GCCGTATTAA AACAGTTGGG AATTGTCTAC TGCCAAGGCT TTCTACTCGG CCGCCCAAGC GACTCTCCCA ATCGCTGTAT TCCATTTGAA CCCACTTTAG AACCGACAGC ACAAAAGGTA CGATTTGCCG AATCGGCAGA AAGCCTTTGC AGTCGAGCCA CAACCAGCCA ATTTGATCGT AAACTCAAGC AGATTGGCGA GACATTTAAT CAGCAACCCA AGCTTCAAGC CATAGTGGTA ATGCGACAGG ATCTGGTGAT TGGATTGGTG TTAAGAAGTC AGGTTATAGA GCTGTTTAGC ACCCCATATG GTCGAGCACT ATATGAAAAC AGAAGCGTAG AAGAAGTATT AACCACTGAG CTCATTCGAA TTGACGCAGA AATGCCGATA TCTCAAGTTA GCCAGCGCCT AACCAAGGAG TCTACCGATC TTGTGGTGCA GCAATTTATT ATTCTTAAAC AAGGAAAGTT ACTGGGGATC GGACACACCA AAGATCTTTT AGCTAAAATA ACCGTTCAAA AAATTGCTAT CGCGAGACAC GCAAATCCGC TAACAGGGCT GCCTGGTAAT ATTCCTATTC AAGAAGAGCT ACTGAGATTA CGCCAACAAA AAAAGCCTTT CTATTTGGCT TACTTTGACC TATCTCACTT TAAACCCTAT AACGATATCT ACGGATTCTG CCGCGGCGAT GAAGTGATTA TGGAGGTTGC TCGCCTACTC TTATGTCTGC AAACCAGTAA TAACTTTATC GGCCATGTGG GGGGAGATGA TTTTGTCATA ATCAGTACTT GTGCCAATAT TGAGCCCCAA GCAATGAAAA TTATTGATGA TTTCGACGCA ACGAAGTCAT CATTTTATTC TAAGCAACAT TGGCAAGATC AGAAGATGTT AGCTGAAGAT AGAAATGGCC TGCAGTGCTA CCACGACCTT ATCTCGCTCA GCGTGGGGAT ACTCCCGCCC TCAATCACCA TCCACTGTAA TGAACATCAA CTATCACTCT ATAGTGCACA GGCAAAAAAA CAGGCCAAAC AAGCAAAAAA TGCATTTAGC CTATTTTCAC TAGAGACAGC TATTAGCGCA TAA
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Protein sequence | MSAIDLQLEL SKIIDKEKIK AVFQPICNIS THQVHGFEAL SRGPEHSPLF SPVPLFKTAA YEGRLSELET LCRRISIQQF KNIQLPGKLF LNISPKALLE PNHAKGLTLS LVQELGLHPS QVVIELSEQY PADDIDLLKS CLNHYRSQGF LTAIDDLGAG YSGLRLWSEL APDYVKIDRH FIESIDSSSV KQEFVRSIIN LCQNLSCKVI AEGIETQAEL AVLKQLGIVY CQGFLLGRPS DSPNRCIPFE PTLEPTAQKV RFAESAESLC SRATTSQFDR KLKQIGETFN QQPKLQAIVV MRQDLVIGLV LRSQVIELFS TPYGRALYEN RSVEEVLTTE LIRIDAEMPI SQVSQRLTKE STDLVVQQFI ILKQGKLLGI GHTKDLLAKI TVQKIAIARH ANPLTGLPGN IPIQEELLRL RQQKKPFYLA YFDLSHFKPY NDIYGFCRGD EVIMEVARLL LCLQTSNNFI GHVGGDDFVI ISTCANIEPQ AMKIIDDFDA TKSSFYSKQH WQDQKMLAED RNGLQCYHDL ISLSVGILPP SITIHCNEHQ LSLYSAQAKK QAKQAKNAFS LFSLETAISA
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