Gene Spea_3724 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSpea_3724 
Symbol 
ID5664109 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella pealeana ATCC 700345 
KingdomBacteria 
Replicon accessionNC_009901 
Strand
Start bp4530343 
End bp4532085 
Gene Length1743 bp 
Protein Length580 aa 
Translation table11 
GC content44% 
IMG OID641238384 
Productdiguanylate cyclase/phosphodiesterase 
Protein accessionYP_001503570 
Protein GI157963536 
COG category[T] Signal transduction mechanisms 
COG ID[COG2200] FOG: EAL domain
[COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.0883602 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCCGCAA TCGATCTGCA ACTAGAACTC TCAAAGATCA TCGATAAAGA AAAAATCAAA 
GCGGTCTTTC AACCTATATG TAATATCTCT ACCCACCAAG TTCATGGTTT TGAAGCATTA
AGCCGCGGAC CTGAGCATAG TCCACTATTT TCACCTGTAC CATTATTTAA AACGGCAGCT
TACGAGGGAC GTCTATCTGA GCTTGAGACC CTCTGTCGAC GGATCTCCAT TCAACAGTTT
AAAAACATCC AGCTGCCAGG CAAGCTATTC CTAAATATTT CACCTAAAGC GCTGTTAGAG
CCTAATCATG CTAAAGGGCT CACCCTCAGC CTAGTACAAG AGCTCGGGTT ACATCCATCT
CAGGTCGTTA TTGAGCTATC GGAGCAATAT CCTGCCGACG ATATCGATCT ACTCAAGTCC
TGTCTCAACC ACTACCGTAG CCAAGGATTT CTCACGGCGA TCGATGACTT GGGAGCCGGA
TATTCCGGTT TAAGGCTCTG GTCAGAATTA GCACCAGATT ATGTGAAGAT TGATCGTCAC
TTTATCGAGT CGATAGATAG CTCGTCAGTG AAGCAAGAGT TTGTTCGCTC TATCATCAAT
CTCTGTCAAA ACCTCAGCTG CAAGGTGATA GCCGAAGGCA TTGAGACTCA GGCAGAATTA
GCCGTATTAA AACAGTTGGG AATTGTCTAC TGCCAAGGCT TTCTACTCGG CCGCCCAAGC
GACTCTCCCA ATCGCTGTAT TCCATTTGAA CCCACTTTAG AACCGACAGC ACAAAAGGTA
CGATTTGCCG AATCGGCAGA AAGCCTTTGC AGTCGAGCCA CAACCAGCCA ATTTGATCGT
AAACTCAAGC AGATTGGCGA GACATTTAAT CAGCAACCCA AGCTTCAAGC CATAGTGGTA
ATGCGACAGG ATCTGGTGAT TGGATTGGTG TTAAGAAGTC AGGTTATAGA GCTGTTTAGC
ACCCCATATG GTCGAGCACT ATATGAAAAC AGAAGCGTAG AAGAAGTATT AACCACTGAG
CTCATTCGAA TTGACGCAGA AATGCCGATA TCTCAAGTTA GCCAGCGCCT AACCAAGGAG
TCTACCGATC TTGTGGTGCA GCAATTTATT ATTCTTAAAC AAGGAAAGTT ACTGGGGATC
GGACACACCA AAGATCTTTT AGCTAAAATA ACCGTTCAAA AAATTGCTAT CGCGAGACAC
GCAAATCCGC TAACAGGGCT GCCTGGTAAT ATTCCTATTC AAGAAGAGCT ACTGAGATTA
CGCCAACAAA AAAAGCCTTT CTATTTGGCT TACTTTGACC TATCTCACTT TAAACCCTAT
AACGATATCT ACGGATTCTG CCGCGGCGAT GAAGTGATTA TGGAGGTTGC TCGCCTACTC
TTATGTCTGC AAACCAGTAA TAACTTTATC GGCCATGTGG GGGGAGATGA TTTTGTCATA
ATCAGTACTT GTGCCAATAT TGAGCCCCAA GCAATGAAAA TTATTGATGA TTTCGACGCA
ACGAAGTCAT CATTTTATTC TAAGCAACAT TGGCAAGATC AGAAGATGTT AGCTGAAGAT
AGAAATGGCC TGCAGTGCTA CCACGACCTT ATCTCGCTCA GCGTGGGGAT ACTCCCGCCC
TCAATCACCA TCCACTGTAA TGAACATCAA CTATCACTCT ATAGTGCACA GGCAAAAAAA
CAGGCCAAAC AAGCAAAAAA TGCATTTAGC CTATTTTCAC TAGAGACAGC TATTAGCGCA
TAA
 
Protein sequence
MSAIDLQLEL SKIIDKEKIK AVFQPICNIS THQVHGFEAL SRGPEHSPLF SPVPLFKTAA 
YEGRLSELET LCRRISIQQF KNIQLPGKLF LNISPKALLE PNHAKGLTLS LVQELGLHPS
QVVIELSEQY PADDIDLLKS CLNHYRSQGF LTAIDDLGAG YSGLRLWSEL APDYVKIDRH
FIESIDSSSV KQEFVRSIIN LCQNLSCKVI AEGIETQAEL AVLKQLGIVY CQGFLLGRPS
DSPNRCIPFE PTLEPTAQKV RFAESAESLC SRATTSQFDR KLKQIGETFN QQPKLQAIVV
MRQDLVIGLV LRSQVIELFS TPYGRALYEN RSVEEVLTTE LIRIDAEMPI SQVSQRLTKE
STDLVVQQFI ILKQGKLLGI GHTKDLLAKI TVQKIAIARH ANPLTGLPGN IPIQEELLRL
RQQKKPFYLA YFDLSHFKPY NDIYGFCRGD EVIMEVARLL LCLQTSNNFI GHVGGDDFVI
ISTCANIEPQ AMKIIDDFDA TKSSFYSKQH WQDQKMLAED RNGLQCYHDL ISLSVGILPP
SITIHCNEHQ LSLYSAQAKK QAKQAKNAFS LFSLETAISA