| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_3590 |
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| Symbol | |
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| ID | 5663976 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | - |
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| Start bp | 4382163 |
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| End bp | 4384622 |
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| Gene Length | 2460 bp |
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| Protein Length | 819 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 641238252 |
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| Product | ribonuclease R |
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| Protein accession | YP_001503438 |
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| Protein GI | 157963404 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.0101048 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATACAAG ATCCGCATAT TAAGCGTGAG CAAGAAAAAT ACGAAAACCC AATTCCAAGT
CGTGAGTACA TTTTAGATTA CTTGCGCTCA CAAACGTCAC CATTAACTCG TGAACATATT
GCTACAGCCC TAAAAATTGA AGGCGAAGAG CAGCTAGAAG CAATTCGTCG TCGCCTGCGT
GCGATGGAGC GTGACGGTGA ACTAGTGTTT ACCCGTGGTC AGTCATATGG CTTGCCTGAG
AGAATGGACC TGTTAACCGG TACCGTGATT GGTCACCGTG ATGGCTTTGG TTTCTTGAAA
TTAGAAGAGG GCGGCGACGA CCTTTATATC AATAACCGTG ACATGTTGAT GTATTTCCAC
GGTGACAGAG TCCTTGCGCA AAAAGCGGGT GTAGACCGTA AGGGTCGCCG TGAAGCGCGT
ATTGTACGTT TGGTTGAAGA GCGTAGCGCC GCATTAGTGG GCCGTTTTCA CCTAGACGCT
GGCATGGGTT TTGTGATTGC CGATGACCGC CGCATCACCC AAGAGATTTT AGTTCCCGAA
GAAGATCGCA AGGGCGCGCG TCAAGGCGAT ATCGTGGTAC TTGAGCTAAC ACGCCGTCCA
GGTCGTTACG TCAAAGCCGC TGGTAAAGTG ACTGAAGTGC TAGGTAAAGA GATGGCACCG
GGCATGGAGA TTGAGATTGC GCTGCGCAAT TACGATCTGC CGCACACATG GTCAGGCCTG
ATTGAGAAGA AGCTGCGTAA AATCCCTGAC GAAGTTACCG AAGCTGACAA AGAAGGTCGC
GTTGACTTAC GTAATTTGCC ATTAGTGACT ATCGATGGTG AAGATGCACG AGATTTTGAT
GATGCAGTTT ACGCCGAGAA GAAAAAGTCT GGCGGCTGGC GCTTATGGGT AGCCATTGCG
GACGTGAGTC ATTACGTACG CACAGAATCT GCACTCGATA AAGAAGCGCG CGCTCGTGGT
AACTCGGTGT ATTTCCCATC GCAAGTTATC CCTATGCTGC CTGAGAAGAT CTCTAATGGT
CTGTGCTCTT TAATGCCTAA GGTCGATCGT CTATGCATGG TTGCAGAGAT GACCATCTCT
GCAGTAGGAA AATTGTCGGG TTATAAGTTC TACCCTGCAG TAATGCACTC GCATGCGCGT
TTAACTTATA CCCAAGTGGC TGACATGCTT GAGGGCGGAG AGGTGAGTGA TGAGCTTAAG
CCTATATTCC CGCACCTACA GACATTGCAA TCGCTATATC TGACATTAGA AGAGACCCGC
GCAGAGCGTG GTGCAATTGC ATTTGAAACT ACTGAAACGC AATTTATCTT CAATGAGCAG
CGTAAGATCG ACAAGATTGT GCCGCGTAAC CGTAACCAGG CACACAAGAT CATCGAAGAG
TGTATGATTT TGGCTAACGT TGCGTCTGCT AAATTTGTTA AAAAGCACAA AGGTGAAGTG
TTATACCGTG TGCATGAGGC GCCTTCAGAG CAAAAGCTAA CCAACTTTAA GGATTTCCTT
AAAGAGCGTG GCTTAACGAT GGAAGGTGGC TTAGAGCCAG AGCCTAAAGA TTACCAAGCG
GTGATGGAGC AAATTGCTGA CAGAGCCGAT GCAGAGCTTA TTCAGGTAAT GTTGCTACGC
TCTATGCGTC AAGCAACCTA TACCCCAGAT AATGAAGGTC ACTTTGGTTT GGCACTTGAG
GAGTATTCTC ACTTTACCTC GCCAATTCGT CGTTATCCAG ATTTGATCTT GCACCGCGTG
ATCCGTTATT TACTTGCTAA GCAAGAAGGT AACTTAACTG ATCAATGGAC TGCAGATGGC
GGTTTTAATT ATAAGATTGA AGAGTTGGAT CTGTTAGGTG AAGAGTGTTC GACTACCGAG
CGTCGCGCCG ATGAAGCAAC TCGAGATGTG AGTGACTGGC TTAAGTGTGA GTTTATGCAA
GATCATGTCG GTGACACTTT CGAAGCTGTG ATCGCTTCGG TGACACATTT TGGCATGTTT
GTTCGCCTAA ACGATCTGTT TATCGATGGT CTCGTGCATA TCTCAAGCCT AGGTAGTGAT
TATTATCAGT ATGATAATAT GCGCCAGCGT TTAGTGGGGG AAGCCTCGGG ACAGGTTTAT
CAGATTGGTG ATACGGTTAC GGTCAAAGTT GCTGGGGTTA ATCTTGATGA CCGTCAGATT
GACTTGATGA TGGAAGGCGA CTCTGCAGGC GGTAAACGTC GTAGGCCAAC CAAACCATTA
ACCGCGCGTG AGCGAGTGAA CCGTGAAGGT GCAAAGCTTG GTGCTAAGCG TGAGTCTTCT
AGAGGCAAAG GCGCAGAGGG TGACTCTGAG GCTAAGTCAG GGGCAAAGCG TAAGTCGAGC
GGCGGTAAAT ATAAGAGCGG CAGCAGCGCT GCAGCTAAAA AGACTAAGAC AAAAGCTTCG
GCAAAAAAAT CTTCAGCGAG TAAAGCTAAG TCAGCCAAGC GTAAAGCGAG TAAGAAATAG
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| Protein sequence | MIQDPHIKRE QEKYENPIPS REYILDYLRS QTSPLTREHI ATALKIEGEE QLEAIRRRLR
AMERDGELVF TRGQSYGLPE RMDLLTGTVI GHRDGFGFLK LEEGGDDLYI NNRDMLMYFH
GDRVLAQKAG VDRKGRREAR IVRLVEERSA ALVGRFHLDA GMGFVIADDR RITQEILVPE
EDRKGARQGD IVVLELTRRP GRYVKAAGKV TEVLGKEMAP GMEIEIALRN YDLPHTWSGL
IEKKLRKIPD EVTEADKEGR VDLRNLPLVT IDGEDARDFD DAVYAEKKKS GGWRLWVAIA
DVSHYVRTES ALDKEARARG NSVYFPSQVI PMLPEKISNG LCSLMPKVDR LCMVAEMTIS
AVGKLSGYKF YPAVMHSHAR LTYTQVADML EGGEVSDELK PIFPHLQTLQ SLYLTLEETR
AERGAIAFET TETQFIFNEQ RKIDKIVPRN RNQAHKIIEE CMILANVASA KFVKKHKGEV
LYRVHEAPSE QKLTNFKDFL KERGLTMEGG LEPEPKDYQA VMEQIADRAD AELIQVMLLR
SMRQATYTPD NEGHFGLALE EYSHFTSPIR RYPDLILHRV IRYLLAKQEG NLTDQWTADG
GFNYKIEELD LLGEECSTTE RRADEATRDV SDWLKCEFMQ DHVGDTFEAV IASVTHFGMF
VRLNDLFIDG LVHISSLGSD YYQYDNMRQR LVGEASGQVY QIGDTVTVKV AGVNLDDRQI
DLMMEGDSAG GKRRRPTKPL TARERVNREG AKLGAKRESS RGKGAEGDSE AKSGAKRKSS
GGKYKSGSSA AAKKTKTKAS AKKSSASKAK SAKRKASKK
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