Gene Spea_3570 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSpea_3570 
Symbol 
ID5663956 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella pealeana ATCC 700345 
KingdomBacteria 
Replicon accessionNC_009901 
Strand- 
Start bp4356098 
End bp4357084 
Gene Length987 bp 
Protein Length328 aa 
Translation table11 
GC content47% 
IMG OID641238232 
ProducttRNA-dihydrouridine synthase A 
Protein accessionYP_001503418 
Protein GI157963384 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0042] tRNA-dihydrouridine synthase 
TIGRFAM ID[TIGR00742] tRNA dihydrouridine synthase A 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCAGTTA GACCAATCAA TCGCACCTTC TCAATCGCTC CCATGCTGGA TTGGACCGAC 
AGGCATTACC GCTATTTTGC GCGTCTGATG TCTTCTCAGA CCTTGCTATA TACCGAGATG 
GTAACAACCG GGGCGATTTT GCATGGACGA GGTGATTACC TAGCTTATAA CCAAGAAGAG 
CACCCGTTAG CATTGCAGCT TGGCGGTTCG AATCCAGTAG ATCTTGCAGC CTGTGCCAAG 
CTCGCAGCCG AGCGTGGTTA CGATGAGATT AATCTTAACG TCGGCTGCCC ATCGGATAGA 
GTGCAGAATG GCCGCTTTGG CGCCTGCCTG ATGGCTGAGC CTGAGTTGGT GGCTGAATGT 
GTGACGGCAA TGAAGCAAGT GGTGGATATT CCGGTTACGG TTAAGACTCG TATTGGTATC 
GATGAGCAAG ATAGCTATGA GTTTTTAACT CAATTTATCG ATACAGTAAA AGCTGCTGGC 
TGTGAAGAAT TTATTATCCA TGCACGTAAG GCTTGGCTTC AAGGTTTGAG TCCGAAAGAG 
AATCGCGAGA TCCCGCCATT AGATTATGAG CGTGTATATC AACTTAAACG AGATTACCCA 
GAGTTAAATA TCTCGATTAA CGGCGGTGTT AAAACGCTAG AGGAGTGTCA GACTCACTTG 
CAGCACCTTG ACGGAGTAAT GGTGGGTCGT GAAGCCTATC AAAATCCATA TATTCTTGCA 
GAAGTCGATC AGAAGTTATG CGGTATCGAT GCGCCGGTGA TGAGTCGAGA TGCTGTTTTG 
GAGAAACTAC TTCCTTATAT AGAGAAACAT CTGCAGCAAG GCGGACGCCT TAACCATATT 
TCTCGCCATA TTATTGGTCT TTTCCAAGGT GAGGTAGGCT CCCGTGTATG GCGCCGATAT 
ATAAGCGAAA ATGCTCATAA GCAAGGCGCT GGTATTGAGG TGATAACTCA GGCGAGAGCC 
GAGATGGACT CGGTTGTGAG CCTATAG
 
Protein sequence
MSVRPINRTF SIAPMLDWTD RHYRYFARLM SSQTLLYTEM VTTGAILHGR GDYLAYNQEE 
HPLALQLGGS NPVDLAACAK LAAERGYDEI NLNVGCPSDR VQNGRFGACL MAEPELVAEC 
VTAMKQVVDI PVTVKTRIGI DEQDSYEFLT QFIDTVKAAG CEEFIIHARK AWLQGLSPKE 
NREIPPLDYE RVYQLKRDYP ELNISINGGV KTLEECQTHL QHLDGVMVGR EAYQNPYILA 
EVDQKLCGID APVMSRDAVL EKLLPYIEKH LQQGGRLNHI SRHIIGLFQG EVGSRVWRRY 
ISENAHKQGA GIEVITQARA EMDSVVSL