| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_3558 |
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| Symbol | |
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| ID | 5663944 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | - |
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| Start bp | 4345741 |
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| End bp | 4347636 |
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| Gene Length | 1896 bp |
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| Protein Length | 631 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 641238220 |
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| Product | DNA topoisomerase IV subunit B |
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| Protein accession | YP_001503406 |
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| Protein GI | 157963372 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0187] Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit |
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| TIGRFAM ID | [TIGR01055] DNA topoisomerase IV, B subunit, proteobacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.236932 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTGTGCCA TGACAAACCA ATACACCTCA GATGCTATTG AAGTCCTAAA TGGACTCGAC
CCTGTTAAAC GTCGCCCCGG TATGTATACC GATACTTCGC GCCCAAACCA TTTAGGACAG
GAAGTCATAG ATAATAGTGT CGACGAGGCA TTGGCGGGCC ACGCCAGTCG TATCGACGTT
ATCTTGCATG CCGATAATTC ATTGGAAGTC ATCGATGACG GCCGTGGTAT GCCTGTCGAT
ATTCACCCTG AAGAGGGGAT CCCAGGTGTC GAGCTTATTC TAACTAAGCT GCACGCGGGT
GGTAAATTCT CTAATAAAAA CTATCAGTTT TCAGGTGGTC TTCACGGTGT GGGGATCTCG
GTTGTAAACG CGCTATCAAG CCGAGTCGAA ATTACCGTTA GGCGTAATGC TGAAGTGTAT
GAGATGGCCT TTGAGCACGG TGAAAAAGTC GAAGACTTAC ATGTGACTGG CACCTGTGGT
CGTCGTAACA CAGGCACTAG CGTGCATTTT TGGCCTGATG CGAGTTATTT CGACTCGGGT
AATTTCTCGA TCTCCAAGCT GACCTATTTA CTTAAAGCTA AGGCCGTACT TTGTCCGGGT
CTACGGATTA AATTTGTTAA TAAGCAGACC AATGAAACCC AAGAGTGGTT TTATGAAAGT
GGCTTAGAAG ACTACTTAAG ATCATCCTTC AAAGGTGTTC CAACACTGCC TGAAGTGCCA
TTTGTTGGCA GTTTTGCCGG TAATTTAGAA GCCGCAGATT GGGCGATTAC TTGGTTGCCT
GAAGGTGGTG AGTATCTCAA CGAAAGTTAT GTAAACCTTA TTCCTACGCC GCTTGGTGGT
ACTCACGTTA ACGGTTTTAG ACAGGGCTTG CTCGAGTCTA TGCGTGAATT CTGTGAATTT
AGAAACTTGA TGCCGCGAGG CATTAAGCTA ACCCCAGAAG ATATCTGGGA TCGCAGCACC
TTTATCTTAT CGATCAAGAT GCAAGATCCG CAATTTGCAG GCCAAACCAA AGAGAAGCTT
TCAAGCAGAC AGTGCGCTGC GTTTGTATCG GGCATTGTAC GCGATGCCTT CAGCCTTTGG
TTAAACACCA ACACCGAACA GGCTGAAGCC TTAGCCGATA TGTGTATTAA TAATGCACAG
AAGCGTTTAA AAGCGGCCAA GAAAGTGGCC CGTAAGCGTA TTACCTCAGG CCCAGCCCTG
CCGGGTAAGC TGACGGACTG TAGCGGACAA GATCCAATGC GTGGCGAGCT ATTTCTAGTG
GAGGGTGACT CTGCGGGTGG TAGTGCTAAG CAGGCTCGCG ATCGTGAGTT CCAGGCGATT
ATGCCGCTAC GTGGTAAGAT TTTGAATACT TGGGAGGTCG ATGCCTCTCA GGTGTTAGCT
TCACAAGAAG TTCATGATAT CTCGGTAGCC ATTGGTTGCG ACCCAGATAG TGCCGATATT
TCTGAACTGA GATACGGTAA AATCTGTATC CTCGCCGATG CTGACTCGGA TGGTTTGCAT
ATTGCGACCT TGCTATGCGC TTTGTTTATG AAGCATTACC GAGTGCTGGT AGAGCAGGGG
CATATCTATG TTGCTATGCC GCCACTGTTC CGTATCGATA TAGGTAAAGA TGTATTTTAC
GCCCTCGATG AGGCTGAAAA AAACGGTATT CTTGATAGAA TAACCGCAGA AAAACGCAAA
GGAAAAGTCC AAGTTACACG ATTTAAGGGG CTGGGTGAGA TGAACCCATT GCAACTACGT
GAAACGACGA TGGACCCCAA TACGCGTCGA CTAGTGCAAC TTACCATAGA TGACGCCGAG
GATACTTTGG CGCTTATGGA TATGCTTTTA GCCAAGAAAC GTTCTGGTGA CAGAAAAATT
TGGCTAGAGA CTAAGGGTGA TCTCGCCCAG ATCTAG
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| Protein sequence | MCAMTNQYTS DAIEVLNGLD PVKRRPGMYT DTSRPNHLGQ EVIDNSVDEA LAGHASRIDV
ILHADNSLEV IDDGRGMPVD IHPEEGIPGV ELILTKLHAG GKFSNKNYQF SGGLHGVGIS
VVNALSSRVE ITVRRNAEVY EMAFEHGEKV EDLHVTGTCG RRNTGTSVHF WPDASYFDSG
NFSISKLTYL LKAKAVLCPG LRIKFVNKQT NETQEWFYES GLEDYLRSSF KGVPTLPEVP
FVGSFAGNLE AADWAITWLP EGGEYLNESY VNLIPTPLGG THVNGFRQGL LESMREFCEF
RNLMPRGIKL TPEDIWDRST FILSIKMQDP QFAGQTKEKL SSRQCAAFVS GIVRDAFSLW
LNTNTEQAEA LADMCINNAQ KRLKAAKKVA RKRITSGPAL PGKLTDCSGQ DPMRGELFLV
EGDSAGGSAK QARDREFQAI MPLRGKILNT WEVDASQVLA SQEVHDISVA IGCDPDSADI
SELRYGKICI LADADSDGLH IATLLCALFM KHYRVLVEQG HIYVAMPPLF RIDIGKDVFY
ALDEAEKNGI LDRITAEKRK GKVQVTRFKG LGEMNPLQLR ETTMDPNTRR LVQLTIDDAE
DTLALMDMLL AKKRSGDRKI WLETKGDLAQ I
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