Gene Spea_3490 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSpea_3490 
Symbol 
ID5663876 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella pealeana ATCC 700345 
KingdomBacteria 
Replicon accessionNC_009901 
Strand
Start bp4262331 
End bp4265525 
Gene Length3195 bp 
Protein Length1064 aa 
Translation table11 
GC content46% 
IMG OID641238146 
Productbifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase 
Protein accessionYP_001503338 
Protein GI157963304 
COG category[C] Energy production and conversion
[E] Amino acid transport and metabolism 
COG ID[COG0506] Proline dehydrogenase
[COG4230] Delta 1-pyrroline-5-carboxylate dehydrogenase 
TIGRFAM ID[TIGR01238] delta-1-pyrroline-5-carboxylate dehydrogenase (PutA C-terminal domain) 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000664694 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAAGCGA TTATTATGTT CAAAGCGAGT GAAGTTCTAG CTGGTCATTA TGATACAGCC 
GATCTCAACG AACTGTTCCA AGCGATCAGC GATAATTACA TTGTCGATGA AGAACAATAT
TTATCTGATT TGATAAAGCT AGTTCCTTCA AGTGATGAAG AGATCAACCG TGTGACCACC
CGAGCACACG AGCTAGTTAA TAAAGTCCGT CAATACGACA AGAAAGGCCT TATGGTCGGT
GTTGACGCTT TCCTTCAGCA ATATAGCTTA GAGACTCAGG AAGGCATTAT TTTAATGTGT
CTTGCCGAGG CGCTACTGCG TATTCCTGAT GCCGCCACCG CCGACGCACT AATCGAAGAC
AAGCTATCGG GTGCTAAGTG GGATGAACAT TTAAGCAAGA GTGATTCAAT CCTAGTAAAT
GCATCCACCT GGGGGTTAAT GTTAACGGGT AAAATCGTTA AGCTGGATCA TAGTATTGAC
GGTAAACCCA GTAGCCTACT CAACCGCCTA GTCAATAAAG TTGGCGAACC AGTCATTAGA
CAATCCATGC TTGCAGCAAT GAAGATCATG GGTAAGCAGT TTGTACTAGG TCGTACCGTT
AAAGAAGCCC TCAAGAACAG CAACGACAAA CGTAAACTTG GCTACACCCA TAGCTACGAC
ATGTTAGGTG AAGCGGCGCT AACGAAAAAA GACGCGCTAA AATACTTCGA AGATTACTCA
AGCGCTATTG CTTCTCTAGG TGCTCAAGAA TATGACACTA GCGATGCGCC TCGCCCAACT
ATCTCTATCA AGCTTTCTGC ACTGCATCCT CGCTATGAAG TCGCCAATGA AGACAGAATA
CTCACCGAGC TGTATGACAC GCTAATTCTG CTTATCAAGC AAGCTCGCAG CCTTAATGTG
GGGATTTCAA TTGACGCAGA AGAGATGGAT AGACTTGAAC TTTCTCTCAA GCTATTCCAG
CAATTATATA ACTCAGATGC AGCAAAAGGC TGGGGACTGT TAGGTATCGT TGTTCAGGCC
TATTCAAAGC GCGCCTTACC TGTACTTTGC TGGTTAACCC GCCTGTCAAA AGATCAAGGC
GATGAGATCC CACTGCGCTT AGTGAAAGGA GCCTATTGGG ACAGTGAACT TAAATGGGCA
CAAGAGAACG GCGAAGGTGG TTACCCACTT TATACTCGCA AAGCCGGTAC CGATGTTTCA
TATCTTGCCT GTGCGCGATA CTTGTTATCT GATGCTACTC GCGGCGCGAT TTACCCGCAG
TTTGCTAGCC ATAACGCACA AACCATTGCC AGTATAACGG ACATGGCTGG CGATCGAGAG
TATGAATTCC AACGTCTACA TGGCATGGGT GAAGAACTCT ATGACACGCT CTTAGCCGAA
AGTGGCGTGA AAAACGTACG TATTTACGCG CCTGTTGGCG CACACAAAGA GCTTTTGCCT
TACCTTGTTC GCCGCCTACT TGAAAATGGT GCCAACACCT CATTTGTACA CAAGCTCGTT
GATCCTAAGA CCCCTATTGA GTCATTAGTG GGACACCCTT TGACAACACT TATGGGTTAC
AGAAGCCTGG CTAATAATAA AATCGTTATG CCTGAAGATA TATTTGGAGC GGAACGTAAA
AACTCCAAGG GACTGAACAT GAACATCATC TCTGAATCTG CACCATTTTT TGCCGCACTC
GATAAATTTA AAGACACCAC TTGGTCAGCG GGTCCGTTAA TTAACGGTGA AACCTTAACT
GGAGAAACCA AGGAAGTTGT AAGCCCATTC GATACTAATT TGGTTGTTGG TAAGATAGCC
TTCGCCAACA ATCAAGCAAT AGAGCAAGCA CTATCGAGTG CCGAAGCCGC TTTTCCAAGT
TGGTGTAATA CACCTGTTGA AGTACGTGCC AATGCCCTAC AAAAACTGGC CGACCTGCTT
GAAGAAAACC GTGAAGAGCT TATCGTGCTT TGTACGCGAG AAGCCGGTAA GAGCATACAA
GATGGCATCG ATGAAGTTCG TGAAGCTGTA GACTTCTGTC GCTACTATGC TGTGCAAGCG
AAGAAGATGA TGGCTAAGCC TGAGTTGCTT CCTGGCCCAA CAGGAGAGCT CAACGAGTTA
TACTTAGAAG GTCGCGGCAT ATTTGTTTGT ATTAGCCCAT GGAACTTCCC ATTAGCTATC
TTCTTAGGTC AAGTGACTGC TGCTCTAGCG GTAGGTAATA CCGTAATCGC AAAACCAGCA
GAGCAGACAT CGATTGTTGG TTACAGAGCG ACTCAGCTTG CACATGAAGC AGGTATTCCT
AAGGACGTGC TGCAATTCCT ACCAGGTACT GGTGCTACAG TCGGAGCGGC GATTACTTCA
GACGAACGTA TTGCTGGCGT ATGTTTTACT GGTTCTACTG CCACAGCGAA GCTAATTAAC
CGTACACTTG CCATGCGTGA AGGTGCGATT ATTCCACTGA TTGCGGAAAC TGGCGGCCAA
AATGCCATGG TGGTCGATTC AACATCTCAA CCAGAGCAAG TGGTTAATGA TGTCGTATCT
TCTTCTTTCA CCAGTGCTGG GCAGCGTTGC TCTGCGTTAC GAGTGCTGTT TTTACAAGAT
GACATCGCCG ATCGCGTGAT CGACGTGATG AAAGGCGCGA TGGAAGAACT GACTATTGGT
AATCCAAACT CAGTGAAAAC CGATGTTGGC CCAGTAATCG ATGCCGCAGC GGCTGCTAAC
TTAAATGCGC ATATTGACCA TATTAAGCAA GTGGGCAAGC TACTCAAGCA AGTCGAACTG
CCTGAAAACA CTAAAAATGG TTACTATGTA GCGCCAACAG CAGTAGAGAT TGACTCGATT
AAAATGCTGG AAAAAGAGCA CTTCGGTCCA ATTTTGCATG TTATCCGTTA CAAGTCTTCA
GAGCTTGATA AGGTAATCGC CGAGATCAAC TCAACCAACT TTGGTCTGAC TTTAGGCATT
CACAGCCGTA ACGAAGGCCA CGCCCTCAAA CTCGCTGATA AGGTGAGAGC GGGTAACGTT
TATATCAATC GTAATCAGAT TGGTGCAGTA GTTGGGGTTC AACCTTTCGG TGGCCAAGGC
CTATCTGGCA CAGGCCCTAA AGCCGGTGGT CCACACTACC TAACGCGCTT TATTACTGAA
AAAACTCACA CCAACAATAT TACCGCTATT GGTGGTAATG CGACCCTGTT GTCATTAGGT
GATAGCGAAG ATTAG
 
Protein sequence
MEAIIMFKAS EVLAGHYDTA DLNELFQAIS DNYIVDEEQY LSDLIKLVPS SDEEINRVTT 
RAHELVNKVR QYDKKGLMVG VDAFLQQYSL ETQEGIILMC LAEALLRIPD AATADALIED
KLSGAKWDEH LSKSDSILVN ASTWGLMLTG KIVKLDHSID GKPSSLLNRL VNKVGEPVIR
QSMLAAMKIM GKQFVLGRTV KEALKNSNDK RKLGYTHSYD MLGEAALTKK DALKYFEDYS
SAIASLGAQE YDTSDAPRPT ISIKLSALHP RYEVANEDRI LTELYDTLIL LIKQARSLNV
GISIDAEEMD RLELSLKLFQ QLYNSDAAKG WGLLGIVVQA YSKRALPVLC WLTRLSKDQG
DEIPLRLVKG AYWDSELKWA QENGEGGYPL YTRKAGTDVS YLACARYLLS DATRGAIYPQ
FASHNAQTIA SITDMAGDRE YEFQRLHGMG EELYDTLLAE SGVKNVRIYA PVGAHKELLP
YLVRRLLENG ANTSFVHKLV DPKTPIESLV GHPLTTLMGY RSLANNKIVM PEDIFGAERK
NSKGLNMNII SESAPFFAAL DKFKDTTWSA GPLINGETLT GETKEVVSPF DTNLVVGKIA
FANNQAIEQA LSSAEAAFPS WCNTPVEVRA NALQKLADLL EENREELIVL CTREAGKSIQ
DGIDEVREAV DFCRYYAVQA KKMMAKPELL PGPTGELNEL YLEGRGIFVC ISPWNFPLAI
FLGQVTAALA VGNTVIAKPA EQTSIVGYRA TQLAHEAGIP KDVLQFLPGT GATVGAAITS
DERIAGVCFT GSTATAKLIN RTLAMREGAI IPLIAETGGQ NAMVVDSTSQ PEQVVNDVVS
SSFTSAGQRC SALRVLFLQD DIADRVIDVM KGAMEELTIG NPNSVKTDVG PVIDAAAAAN
LNAHIDHIKQ VGKLLKQVEL PENTKNGYYV APTAVEIDSI KMLEKEHFGP ILHVIRYKSS
ELDKVIAEIN STNFGLTLGI HSRNEGHALK LADKVRAGNV YINRNQIGAV VGVQPFGGQG
LSGTGPKAGG PHYLTRFITE KTHTNNITAI GGNATLLSLG DSED