| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_3480 |
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| Symbol | |
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| ID | 5663866 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | + |
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| Start bp | 4252242 |
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| End bp | 4253969 |
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| Gene Length | 1728 bp |
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| Protein Length | 575 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 641238136 |
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| Product | spermidine synthase |
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| Protein accession | YP_001503328 |
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| Protein GI | 157963294 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4262] Predicted spermidine synthase with an N-terminal membrane domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.212317 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAAACCG ACTCAAATAA CTCCACCACC GAATCTAGCA ACCCAACCAT AGAATCAGGC
AAATTAGGCT GGTTCGATGA TGTGCTTCTG CTTGGCATCA TGGCCGTGCT CGCTGGATGC
GGCCTTATCT ATGAGTATCT ACTCTCTCAT TATGCCGGAC GCATTCTAGG CGCCCTCGAA
GCTGCTATTT ACACCATGAT AGGTCTGATG ATCGTATCCA TGGGGCTCGG CGCCTTTGCC
GCCCGCAAAA TTCGCTGCGC CTTTACTGGC TTTGCCGTGT TGGAACTTTG CGTCGCGCTT
TGTGGATCGC TAGCAATCTT AATTACTGCA GCCGTTATCG GCTTTGGCCA GCAGCTTCCC
CTTGTTATCG CCAATACTCT TGGCCTACCT GCGGATCAAC TGCCTGATGG TGGTTTTATT
GGCACCTTGC AAAAGCTCAG TGAATATTTG CCTTATGTGT GGGGCGTGCT ACTAGGCCTG
ATGATAGGCA TGGAGATCCC ACTGATCGCA CGCGTGCGCC AAGCACTATC AGAGGCGCAC
TTAATGCACA ACGCTGGCAC CATCTATGGC GCTGATTATG TCGGTGCGGG TATCGGCGCT
GCCATTTGGG TTGGTTTTAT GTTGGCAATT GATATTCAGC TAGCGGCGGC GCTGACTGCC
AGTTTTAATT TGTTAGCCGG CTTTATCTTT ATTTGGCGCT TCTGGCATCA AATTCGCCAT
GTAAAACTGC TCCTCGTTGG CCACTTTATC GCAACGGGGA TCTTAGTGTT ATTGGCGCTA
CACGGGCCAT CATGGGAACA GAGCTTTAAT AACCTGCTCT ATAAAGACAA GGTGGTTTAT
GCCAAGGCGA CTCGCTTTCA ACAGCTGACC TTTACTGAGC GTCTTAGAGG CAACGGTCTT
GGCCCTGTGC ATTCGCTGTA TATCAACGGA CGATTGCAGT TCTCCAGTAG CGATGAGCAT
ATCTATCACT CTTTCTTGGT ACACCCGACC ATGGCGGCTA GCGCACGTCA CGACAAGGTG
TTAATCATTG GCGGCGGCGA TGGCTTAGGA CTTACCCAAG TGTTGCAATG GCAACCAGAG
CAGGTGACGC TAATGGATCT TGATAAGGAA CTGGTTGAGC TGTTTAAGCA ACCCGCTAGC
GATATGCCCG ATCATTTAAG CCGAGCACTA CTCGCACTCA ACCAAGATGC GCTAAACGAC
CCTCGAGTAA GAATTATGTA TGAGGATGCC TTTAACGGAG TTGATAAGTT ATTAGCTAAG
GAAGAGAAGT TCGATGTCAT TATTGTCGAT CTGCCCGACC CGAGTCATCC AGATCTTAAC
AAGCTGTATT CCGATGCCTT CTATTTAAAG CTCAAGGAAC TAATGAGTAA TGACGCTGCC
TTAACCATAC AGTCGACGTC ACCTTATCAC GCCCCTAACG CCTTTATTTC GGTAGGTAAG
ACCTTGGAGC TTGCTGGCTT TAGAGTCGAT CAGTACCACC ATAACGTACC CAGTTTTGGT
GAATGGGGCT GGAGCATTGC TACCTTAGGT GGAAAAAGTG CCCGCACTAG GCTACAAAGT
CTGCAGCAGC TGCCTGTCGA TGACCCTTGG TTAACTCCAG GTCTAATCCA TGCAGCCTTT
GAGTTTCCGG GGAATTTTTA CCAGAACAAA GCAGAAATTA AGCCCAATGT TTTAGGTTCA
AGCCAGCTGT ATCAATATCA TCAGCAGGCT TGGTTAGAAA ATCAGTAG
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| Protein sequence | MQTDSNNSTT ESSNPTIESG KLGWFDDVLL LGIMAVLAGC GLIYEYLLSH YAGRILGALE
AAIYTMIGLM IVSMGLGAFA ARKIRCAFTG FAVLELCVAL CGSLAILITA AVIGFGQQLP
LVIANTLGLP ADQLPDGGFI GTLQKLSEYL PYVWGVLLGL MIGMEIPLIA RVRQALSEAH
LMHNAGTIYG ADYVGAGIGA AIWVGFMLAI DIQLAAALTA SFNLLAGFIF IWRFWHQIRH
VKLLLVGHFI ATGILVLLAL HGPSWEQSFN NLLYKDKVVY AKATRFQQLT FTERLRGNGL
GPVHSLYING RLQFSSSDEH IYHSFLVHPT MAASARHDKV LIIGGGDGLG LTQVLQWQPE
QVTLMDLDKE LVELFKQPAS DMPDHLSRAL LALNQDALND PRVRIMYEDA FNGVDKLLAK
EEKFDVIIVD LPDPSHPDLN KLYSDAFYLK LKELMSNDAA LTIQSTSPYH APNAFISVGK
TLELAGFRVD QYHHNVPSFG EWGWSIATLG GKSARTRLQS LQQLPVDDPW LTPGLIHAAF
EFPGNFYQNK AEIKPNVLGS SQLYQYHQQA WLENQ
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