Gene Spea_3406 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSpea_3406 
Symbol 
ID5663792 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella pealeana ATCC 700345 
KingdomBacteria 
Replicon accessionNC_009901 
Strand+ 
Start bp4160440 
End bp4161102 
Gene Length663 bp 
Protein Length220 aa 
Translation table11 
GC content47% 
IMG OID641238062 
Productputative periplasmic ligand-binding sensor protein 
Protein accessionYP_001503254 
Protein GI157963220 
COG category[S] Function unknown 
COG ID[COG3416] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACTCCAC AAGAACAAGA ACTGATTCAA AACGTAGCTG ATAAATTAAA AGCTAGCCCT 
AACAAGCCAA AAGATGCGGA AGCGGAAAGC TTAATCAGCC AAGAAATCGC TTCTCAAGAA 
GATATCGTTT ACAAGCTAAC TCAAGCAGTA CTTGTACAAG AGATGGCACT AAAAGAGCTT 
AAGTCAAAGA GTGATTTTTT ACAGACTCAA GTTGAGCACT TCAGAAAAGA ATCTGAGCGT 
GGTGCATTAA GCCGCATGAT GGGCGGTGCT AACCCAGCGC CAGTTCAGCC ACAACCTGTA 
CGTCAACCAA GTGCATTTGG TAGCTTTATG CAAACTGCTG CGGGTGTTGC AGCAGGTATG 
GTTGCCGGTA ACCTTATCAG CAACGCACTA TTTGGCGACG AAGCGCCAGC AACTGCAGAA 
GCTGCACCTG AAGTAGCTCC TGAAGCGGCT GAAACTGAAG CACCAACAGA GACAGCTGCT 
GCAGATACTG CAGTGCCAGA AGATGCAGGT TCAAGCTTCT TAGACGATAA CTCAGGTTTC 
GCTTCTGAAT ACAGCAGCGA AGATACCTTT GCTAACACTG GTTTTGGCGG TGATGAAAGC 
TTTGGTGGCT TCGATGACGG CGGTTTCGGT GGTGACTTCG GTGGCGACGA CGAAGAGTTT 
TAA
 
Protein sequence
MTPQEQELIQ NVADKLKASP NKPKDAEAES LISQEIASQE DIVYKLTQAV LVQEMALKEL 
KSKSDFLQTQ VEHFRKESER GALSRMMGGA NPAPVQPQPV RQPSAFGSFM QTAAGVAAGM 
VAGNLISNAL FGDEAPATAE AAPEVAPEAA ETEAPTETAA ADTAVPEDAG SSFLDDNSGF 
ASEYSSEDTF ANTGFGGDES FGGFDDGGFG GDFGGDDEEF