Gene Spea_3397 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSpea_3397 
Symbol 
ID5664823 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella pealeana ATCC 700345 
KingdomBacteria 
Replicon accessionNC_009901 
Strand
Start bp4151994 
End bp4152731 
Gene Length738 bp 
Protein Length245 aa 
Translation table11 
GC content45% 
IMG OID641238053 
Productextracellular solute-binding protein 
Protein accessionYP_001503245 
Protein GI157963211 
COG category[E] Amino acid transport and metabolism
[T] Signal transduction mechanisms 
COG ID[COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGAAGT CAGTATTGGT TGTAGCAAGC TTAGGGTTAA CAGGCGCTTT AATGTTAACT 
GGCTGCGGTA AGAGTGATGA TGTACTTGTT GTAGGCACCA ATGCTTCATT CCCGCCATTT
GAATATGTAG GCGGTGCTAG CGGCGATGAG ATAATGGGCT TCGATATCGA TTTAGCTAAG
CAAATAGCAA AAGATGCCGG TAAAACCCTC AAAGTTGAAA ACATGAATTT TGACTCGCTG
ATTGTTGCGC TCAATGCAGG CAAGGTCGAC TTTATCGCCT CGGGCATGAC TATTACCCCA
GAGCGTCAGG CAAGCGTCGA TTTCTCAGAG CCTTACTATG AAGCCACTCA GATGGTGTTA
GTCAATAAAG ATAACAACAG CATCAATAGT CTAGACGACC TTAAGGGTAA GCATATCGCG
GTACAGCTAG GCTCAACCGG CGACATCATG GCCAAGAGCT ACAGCCAACA GGTTACCGCC
TTCAACTCAG GCTTCGAAGC CGTGATGGAG CTAAAAAATG CCAAGGTTGA TTTGGTGTTG
TTTGACAGCG AACCTGCCAT CAGCTTTTTA GAGAAGAATC CACAGCTAAA AATGGTTGAG
CTGGATTTTT CACCTGAGTT TTATGGCTTT GCAGTGGCTA AGGACAAAGT TGAACTGCTA
AACAGCATCA ACAGCAGCTT AAGCATCATG AAGCAAAACG GTGGCTATGA CGCCCTCGTT
AACAAGCATA TGAAGTGA
 
Protein sequence
MKKSVLVVAS LGLTGALMLT GCGKSDDVLV VGTNASFPPF EYVGGASGDE IMGFDIDLAK 
QIAKDAGKTL KVENMNFDSL IVALNAGKVD FIASGMTITP ERQASVDFSE PYYEATQMVL
VNKDNNSINS LDDLKGKHIA VQLGSTGDIM AKSYSQQVTA FNSGFEAVME LKNAKVDLVL
FDSEPAISFL EKNPQLKMVE LDFSPEFYGF AVAKDKVELL NSINSSLSIM KQNGGYDALV
NKHMK