| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_3384 |
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| Symbol | metH |
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| ID | 5663771 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | + |
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| Start bp | 4132917 |
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| End bp | 4136549 |
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| Gene Length | 3633 bp |
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| Protein Length | 1210 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 641238041 |
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| Product | B12-dependent methionine synthase |
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| Protein accession | YP_001503233 |
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| Protein GI | 157963199 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0646] Methionine synthase I (cobalamin-dependent), methyltransferase domain
[COG1410] Methionine synthase I, cobalamin-binding domain |
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| TIGRFAM ID | [TIGR00640] methylmalonyl-CoA mutase C-terminal domain
[TIGR02082] 5-methyltetrahydrofolate--homocysteine methyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.73359 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGCACCA TGATCCAAGA CCGTAAGTTT GAAGAGCTGG ATTTTCGGGG CCAGCAGTTC
AAAGACTGGC ATTGCGATGT AAAGGGCAAC AACGACATGT TGGTGCTTAC TCAGCCTGAA
GCCATCAAGC AGATCCATAA AGACTACCTA TTAGCTGGCT CAGACATCAT CGAGACCAAC
ACCTTTAATG CTACCCGTAT CGCGATGGCT GACTACGACA TGCAGGCGCA TTCGGCTGAG
ATTAACCTTG TGGGTGCACG ACTCGCCCGC GAAGCGGCTA ACGAAGTTGA AGCTGAAACT
GGCCGTCAGT GTTATGTCGC GGGTGTACTG GGACCAACCA ACCGCACCTG CTCTATCAGT
CCAGATGTGA ACGACCCGGG TTTTCGTAAC GTCAGCTTCG ATGAGCTGGT TGAGGCCTAT
ATAGAGTCAA TCAACGCCCT AGTTGCTGGC GGCAGCGATA TCATCATGGT GGAAACCATT
TTTGATACCC TAAACGCCAA AGCCGCGCTG TTCGCAATTG AAACCGTATA TGACACTCAA
GGTTTCCGCC TGCCAATTAT GATCTCTGGC ACTATCACCG ATGCCTCAGG CCGTACACTT
ACCGGACAGA CAACCGAAGC CTTCTATAAC TCACTGCGTC ACGTTAAGCC GCTATCTATC
GGTCTTAACT GTGCATTAGG GCCAAAAGAG CTGCGCCCTT ATGTGGAAGA GCTGTCTAAA
ATTTCCGAAT GCTATGTGTC GGCACACCCG AATGCGGGCC TACCCAATGA ATTTGGTGGT
TACGACGAAA CGCCAGAGCA AATGGCGGAA ATCATCGAAG AGTGGGCACA AGAAGGATTC
TTAAACATTA TTGGTGGCTG TTGTGGTACC ACGCCTGATC ATATTCGGGT CATTCGCGAA
GCCGTGATCA AACATTCAGC ACGTCCATTA CCCGATATTC CAGTAGCTTG TCGCCTATCA
GGGCTTGAAC CTCTGACCAT AGATGAGAAC TCGCTATTTT TAAACGTCGG CGAACGTACC
AACGTTACGG GGTCGGCGAA GTTTTTACGC CTAATCAAAA CCGGCGAATA TGAAGAAGCG
TTATCAGTTG CTCGCGAGCA AGTGGAGAAC GGCGCACAGA TCATCGATAT CAACATGGAT
GAAGGCATGC TCGACGGCGC CGAAACCATG CATAAATTCC TCAACCTAAT CGCCTCAGAG
CCCGATATCT CACGGGTACC TATCATGATC GACTCCTCTA AGTGGGAAGT GATTGAGGCT
GGCCTTAAAT GCATTCAAGG TAAAGGCATC GTTAACTCAA TTTCGCTTAA AGAAGGCGAA
GAGAAGTTTA TCGAGCAAGC CAAACTCGTT AAACGCTACG GCGCCGCGGC AATTGTGATG
GCGTTTGATG AAGTTGGCCA AGCCGATACC AAAGCGCGTA AAGTTGAGAT CTGTACCCGC
GCCTACAATG TGTTAGTCGA TAAAGTCGGC TTTCCACCAG AAGACATTAT CTTCGACCCC
AACATCTTTG CTATTGCCAC CGGTATCGAG GAGCACGACA ACTATGCGGT TGACTTTATC
GAAGCCACCG CAGAGATAAA ACGTACCCTA CCCCATGCAA TGATCTCTGG CGGTGTATCT
AACGTGTCAT TCTCTTTCCG TGGAAACAAC CCGGTACGAG AAGCGATTCA CGCCGTGTTC
CTGTACCACG CGATTCAAGC TGGCATGGAC ATGGGTATTG TTAACGCTGG GCAATTGGCG
ATTTATGATG ACATCGACCC AGAGCTTAAG GAAAGAGTCG AAGCCATAGT CCAGAACTTG
CCCTGCAAAG TAGCCGATAC CAATAACACC GAACTGCTAT TAGAAGTCGC AGAAAAGTTC
CGCGGTGACG GCAGCCAAAC CGCCAAAAAA GAAGATTTAG AGTGGCGCAG TAAACCTGTT
AATGAGCGTT TAGCGCACGC GCTAGTGAAA GGCATTACCG AATTTATCGA TGAGGATACC
GAAGAAGCGC GGCAACAAGC CACACGCCCA CTCGATGTGA TTGAAGGTCC ATTGATGGAT
GGCATGAACA TAGTGGGTGA CCTATTTGGC TCGGGTAAGA TGTTCCTGCC TCAGGTGGTA
AAATCAGCCC GCGTGATGAA AAAAGCCGTG GCCTACTTAA ACCCCTATAT TGAGCTTGAG
AAAGTCGCTG GTCAGTCTAA CGGTAAAATA TTAATGGTTA CCGTTAAGGG AGATGTACAC
GATATCGGTA AAAATATTGT CGGCGTGGTT TTAGCTTGTA ACGGCTATGA AGTCATCGAT
TTGGGCGTAA TGGTACCGGT TGAGAAAATC ATCGAAGTCG CTATTGCAGA AAATGTCGAT
ATTATCGGCA TGTCAGGGCT TATCACCCCA AGCCTAGATG AGATGGTACA TAACGTTAAG
AGTTTCCATA AGGCTGGGTT AACCATCCCG TCGATTATTG GCGGTGCCAC CTGCTCTAAA
ATTCATACCG CAGTCAAGAT TGCCCCTCAT TCACCTGAAG GTGCCATCTA TATTGCCGAT
GCATCACGCG CCGTGCCCAT GGTGTCGAAA CTGATCAACG ATGCAACCCG CCAAGCGACT
ATCGACCAAG CCTATGCAGA ATACGATGTT ATGCGCGAGA AACGTCTGTC ACAGACTAAA
CGTAAGGTGA TTACTTCGAT TGCAGCCGCA CGTGAAAACA GTTGCCAACA CGACTGGCAA
AACTACACGC CATTTGTGCC AAATCAGCTA GGGCGTCAGG TATTTGATGA CTACCCACTT
GAAGATTTAG TCGAGCGCAT CGACTGGACC CCCTTCTTTA GAAGCTGGGA ATTACATGGC
CATTTCCCGC GAATTTTAGA AGATGAAGTC GTAGGTATTG AGGCGCGAAA ACTGTTTAGC
GATGGCAAAG CCATGCTGGA TAAAATCATC AGTGAAAAAT GGCTTACCGC CAAGGCTGTG
ATTGGCTTAT TCCCAGCCAA CACTGTTAAC CATGACGATA TAGAGCTTTA CACTGATGAG
ACTCGTAGCG AGCTTGAACT CACGACTCAT CACCTGCGGA TGCAGATTGA GCGTGTCGGT
AATGACAACT TCTGTTTAGC AGACTTTGTT GCGCCAAAAA ATAGTGGTGT TGCCGATTAC
ATGGGCGGCT TTGCGGTAAC CGCTGGCCAT GGCATTGACG AGCATGTGGC TCGCTTTGAA
GCCGACCATG ACGACTACAG CGCGATTATG CTCAAATGCT TAGCCGATCG TTTAGCCGAA
GCCTTTGCCG AGCGTATGCA TGAAAGGGTA CGTAAAGAGT TTTGGGGATA TGCATCTGAT
GAGGTACTCG ATAACGAGGC GCTGATTCGG GAGAAGTACA AAGGCATACG TCCGGCACCG
GGCTACCCCG CTTGCCCAGA TCACACAGAG AAAGGGCTGC TTTGGGACTT ACTCAAGCCT
GATGAAACCA TCGGCCTTAA GATCACCGAA AGCTACGCCA TGTTCCCAAC GGCAGCGGTT
TCAGGTTGGT ACTTTGCCCA TCCTAAATCG CGGTACTTTG GTGTGACCAA CATAGGTCGC
GATCAAGTAG AAGATTATGC GACACGTAAA GGCATGAGCA TCGAGGAGAC CGAGCGCTGG
CTAGCTCCAG TGCTAGACTA CGATCCACAA TAG
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| Protein sequence | MGTMIQDRKF EELDFRGQQF KDWHCDVKGN NDMLVLTQPE AIKQIHKDYL LAGSDIIETN
TFNATRIAMA DYDMQAHSAE INLVGARLAR EAANEVEAET GRQCYVAGVL GPTNRTCSIS
PDVNDPGFRN VSFDELVEAY IESINALVAG GSDIIMVETI FDTLNAKAAL FAIETVYDTQ
GFRLPIMISG TITDASGRTL TGQTTEAFYN SLRHVKPLSI GLNCALGPKE LRPYVEELSK
ISECYVSAHP NAGLPNEFGG YDETPEQMAE IIEEWAQEGF LNIIGGCCGT TPDHIRVIRE
AVIKHSARPL PDIPVACRLS GLEPLTIDEN SLFLNVGERT NVTGSAKFLR LIKTGEYEEA
LSVAREQVEN GAQIIDINMD EGMLDGAETM HKFLNLIASE PDISRVPIMI DSSKWEVIEA
GLKCIQGKGI VNSISLKEGE EKFIEQAKLV KRYGAAAIVM AFDEVGQADT KARKVEICTR
AYNVLVDKVG FPPEDIIFDP NIFAIATGIE EHDNYAVDFI EATAEIKRTL PHAMISGGVS
NVSFSFRGNN PVREAIHAVF LYHAIQAGMD MGIVNAGQLA IYDDIDPELK ERVEAIVQNL
PCKVADTNNT ELLLEVAEKF RGDGSQTAKK EDLEWRSKPV NERLAHALVK GITEFIDEDT
EEARQQATRP LDVIEGPLMD GMNIVGDLFG SGKMFLPQVV KSARVMKKAV AYLNPYIELE
KVAGQSNGKI LMVTVKGDVH DIGKNIVGVV LACNGYEVID LGVMVPVEKI IEVAIAENVD
IIGMSGLITP SLDEMVHNVK SFHKAGLTIP SIIGGATCSK IHTAVKIAPH SPEGAIYIAD
ASRAVPMVSK LINDATRQAT IDQAYAEYDV MREKRLSQTK RKVITSIAAA RENSCQHDWQ
NYTPFVPNQL GRQVFDDYPL EDLVERIDWT PFFRSWELHG HFPRILEDEV VGIEARKLFS
DGKAMLDKII SEKWLTAKAV IGLFPANTVN HDDIELYTDE TRSELELTTH HLRMQIERVG
NDNFCLADFV APKNSGVADY MGGFAVTAGH GIDEHVARFE ADHDDYSAIM LKCLADRLAE
AFAERMHERV RKEFWGYASD EVLDNEALIR EKYKGIRPAP GYPACPDHTE KGLLWDLLKP
DETIGLKITE SYAMFPTAAV SGWYFAHPKS RYFGVTNIGR DQVEDYATRK GMSIEETERW
LAPVLDYDPQ
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