Gene Spea_3346 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSpea_3346 
Symbol 
ID5663734 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella pealeana ATCC 700345 
KingdomBacteria 
Replicon accessionNC_009901 
Strand+ 
Start bp4091116 
End bp4092180 
Gene Length1065 bp 
Protein Length354 aa 
Translation table11 
GC content46% 
IMG OID641238004 
ProductTMAO reductase system periplasmic protein TorT 
Protein accessionYP_001503196 
Protein GI157963162 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1879] ABC-type sugar transport system, periplasmic component 
TIGRFAM ID[TIGR02955] TMAO reductase system periplasmic protein TorT 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.0979105 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGTCAAAG TTTTGCAGCA GAGATTATTA CTCGTTGTTG GCTTAAGTTT TTTAAGCCCT 
CTTGTTAATG CTGCGACAAC GCCATCGTCT TGGTCTTTAG AGCAAAGAAC GCCTTATGAA 
AAAGTATTAC AGCAAACCAC GCCCTTACAA CTCACACCAC TCACCTCGGC TAAGAAAAGT 
TGGCGCATTT GCGTCTTAGT GCCACATTTA AAAGACACCT ACTGGACAGG TATTAACTAC 
GGACTAGTGC AGCAGGCTAA AGCGCTAAGT CTTAAGCTGG AACTGTTCGA AGCTGGTGGT 
TATTACGGCC AAGATAAGCA ACTGTCTCAA CTCGATAACT GCATGAAACA CGGCTTTGAT 
GCCATCTTAC TCGGTGGCGT TCGCCCTGAT ATTTTAGATT TTTATCAAGC CCCCATCACT 
AAACCCGTTA TCGCTCTCGT CAATCGACTC AAGCACCCAA AAGTAAATAC TCGCGTGGGC 
GTGAATTGGT ACCAGATGGG CTTAAAAACA GGGGAATATA TTAAGCAGCA AACCAAGAAG 
CCTACTACCC TCGCCCTATT AACTGGCCCA GACAAACTCG GTGGTAGCGA CTATGTTGAG 
CAAGGGTTAT CTGCCGCCTT GAAAGACAGC TTGGTCTTTA TTAGCGCAGT GCATCACGCC 
GATAATAATC GCAACCTGTA TCGAGATGAG CTAGAGGCAC TACTCGCTGA GCAGACGCCC 
GATTACATTC TCGGCAGCGC CGTCGCCGTT GAAGCCGCGG TCAGCATACT GCGTCAACAT 
CAGCTAAGCG GTAAAGTCAA ACTGATAAGC AGCTATCTAT CTCCAGCGGT TTTACGGGGA 
ATATATCGTG GCAAAGTTGA ATTCAGTAAC GATGATCAGG TGGTGTTGCA AGGAAGACTC 
GCCATTGATA TTACGGTGCG AGAACTAGAG GGTGCAAAAG CCTTTGGCGA TATAGGTCCT 
AAAATCCAAA ATCTATACCC TAGTCACATC AACAAAGAAG TGCTAAAAAC CAGCTTACCA 
CCAGCAGACT ATTACCCCAT TTATCGGGTC AATACTGGAT ATTGA
 
Protein sequence
MVKVLQQRLL LVVGLSFLSP LVNAATTPSS WSLEQRTPYE KVLQQTTPLQ LTPLTSAKKS 
WRICVLVPHL KDTYWTGINY GLVQQAKALS LKLELFEAGG YYGQDKQLSQ LDNCMKHGFD 
AILLGGVRPD ILDFYQAPIT KPVIALVNRL KHPKVNTRVG VNWYQMGLKT GEYIKQQTKK 
PTTLALLTGP DKLGGSDYVE QGLSAALKDS LVFISAVHHA DNNRNLYRDE LEALLAEQTP 
DYILGSAVAV EAAVSILRQH QLSGKVKLIS SYLSPAVLRG IYRGKVEFSN DDQVVLQGRL 
AIDITVRELE GAKAFGDIGP KIQNLYPSHI NKEVLKTSLP PADYYPIYRV NTGY