| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_3315 |
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| Symbol | |
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| ID | 5663703 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | + |
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| Start bp | 4057017 |
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| End bp | 4057574 |
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| Gene Length | 558 bp |
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| Protein Length | 185 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 641237973 |
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| Product | pilin, putative |
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| Protein accession | YP_001503165 |
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| Protein GI | 157963131 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4970] Tfp pilus assembly protein FimT |
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| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.540059 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGTACTCTC CAGCCCAATC CTCTCAACGA CACTCAGGTT TCACGCTAAT TGAGCTGGTT
GTTGTGATTA TCATTTTAGG CATTCTCGCC GTTGTTGCCG CACCTAAGTT TCTGAGCCTT
TCTGAAGATG CACAGGTTTC GCATGTTAAA GCTACTGGTG GCGCCTTTAA ATCGGGGATC
GATTTAGCAA GAGCCGTTTG GGCGGTGAAG GTGGGAGATG GTCCAGCTGA AAATCTTCCG
GTATTTGGAG ACTCAGATGA CAATCACGTC GACTTCAATG CTAACGGCTG GCCTGCCCAG
CATTACTATA CCGATGATGA AGAATCGCCT AAGCTGGATA ACGTTGAAGA CTGTATCTCG
GTGTGGGAAG TACTTTTTCA AAACAAAGAA CCCACGGTTT CAAAATCGAA TTCCGCGGAT
GAAACCGACT ATAAAGTCAG TTACGATAGC TCTGTACCAG CTGTTTGTAT GTTCAGCTAT
ACAGACAACC CTAACCTATC AATTACTTAC AACTCGAATA ATGGTAGCGT TGTGGTGGAC
TCAGATCCGA GCAGCTAG
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| Protein sequence | MYSPAQSSQR HSGFTLIELV VVIIILGILA VVAAPKFLSL SEDAQVSHVK ATGGAFKSGI
DLARAVWAVK VGDGPAENLP VFGDSDDNHV DFNANGWPAQ HYYTDDEESP KLDNVEDCIS
VWEVLFQNKE PTVSKSNSAD ETDYKVSYDS SVPAVCMFSY TDNPNLSITY NSNNGSVVVD
SDPSS
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