Gene Spea_3192 details

Gene Information

• Locus tag: Spea_3192
• ID: 5663581
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella pealeana ATCC 700345
• Kingdom: Bacteria
• Replicon accession: NC_009901
• Strand: +
• Start bp: 3913143
• End bp: 3915026
• Gene Length: 1884 bp
• Protein Length: 627 aa
• Translation table: 11
• GC content: 44%
• IMG OID: 641237851
• Product: diguanylate cyclase
• Protein accession: YP_001503043
• Protein GI: 157963009
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG2199] FOG: GGDEF domain
• TIGRFAM ID: [TIGR00254] diguanylate cyclase (GGDEF) domain; [TIGR01716] transcriptional activator, Rgg/GadR/MutR family, C-terminal domain

Plasmid Coverage information

• Num covering plasmid clones: 16
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCTAAGC TAATTCAGTT ATTACTCATC TCCCTAGCTT TTATTATGGC CTCGGTCAGC 
CATTATGCTG TTTCTGCCAC AACGGATCTC CAACGTGCAG ATGAGCTATT CGACTTGCTC 
GATAGTGGTG TTGTTGAGAA GAACCTCGAA AAGAAGCAAT ACCTCGAAGA GCTGACCCCC 
TTAGTGCCAA AAAATGACCT AGCGAGGCAA TTACGTTTAG CTCGAACCAT CTGCTGGTCA 
TATAACATGC AAGATGATGC TGAAATTGCT CAAGCCTTGT TATTTGCTAA ACAAGCCTTA 
ACGCGTCCGG AGTTAACCAA TTTCCCTGAT GATAAATTGG ACTTAGAGCT TTGCTATGCT 
TGGTTTTCTG AGCAAAAAGG CGATGTCGAT ACAGCGCTGA GTTATTACAA TCGACTGGTC 
ATTGACGCCT ACAAGTTAGA AAATTTGCGC CTAATGGCTG ACGTTCGAAT GATGCGCGGC 
TATTTAACTT CGTTCCAAGG CAACTATACC CAAGGCCTAG AGGACTTAAT GACGGCGCAA 
ACCCTCTATA AAAGTTTAAA TGTCACCGTT TGGGTACAGC ATAGCCTCTA TGAAATCGCG 
ACGATTTATC GCCGCTTAGG TGATCAAGAA AATGCTATCC GTTATTTCAA CCAGTTGCAT 
AAGAGCCACA TCGACAACCA AGAGTTTGAC AAGGCTAACG TGGTGATCTC ATCAATCGCT 
ATTGCTGAAG AGGAGCGCAA GAGCTTTACT CAAGCTAAAA AACTTTTCTT AGAAAGTTAC 
CACTACTGGA ACACTAACCA AAATGGGTTT AAGAAAGCCG GCGTAGCCGT GAACATGGCT 
GGAACCTTAA TTAAACTTGG AGAAATCAAC CAAGCCCTTA AGTACCTAGA TGAGTCAGTT 
CCTTTTATCA CTCCATCTGC GGAAGGCTTC TATAACTATA TGCAGCTGTT TTATGCCCAG 
ATATACTTGG AGCTAGGGCA GTTCGAACAA GCCCACAAAA GCATAGCCTT AGCCCGCGCA 
GCATTTGAGC GAGTCAAGAG TTTGCGCGGA CTGGTGCAGG TGCAACTTGT AGAGAGCCAG 
ATATTTCTTA TGCAAGATAA CTGGCAAGCA GCCTATGAGT CTCTATATAA GTATATGGAG 
CTGCATATGG AGCTTGATAA AAAGCTATTC TCTCGCTACA ACACCGAAAT GCGAACCCGT 
TTTAATGCCG AGCAGATAGA AGCCGAGAAT CGCCACCTCG TTGAAAATCA TAAGCTCAAA 
GAGCTTGAGC TAGCCATGCT GGAGCAAAAT AAAGTTCAGC AATGGATTAT CATTTTTATG 
GGCAGCATAA TCCTTATTAT CATCTCGACT TTCACCTACA AGCAGTCGCA GAAGAATAAA 
TTACTGTCGG CGTTAGCCCT GACTGACGAT CTCACTCAAC TGCCTAATCG ACGCTACATC 
TACACCCAAG CGCAGGACTA CTTTGAGAGC GCAATAAAAA ACCAGCAGGC TTTATCCTGT 
ATTAGTTTCG ATGCTGACTA TTTCAAACTC ATTAATGACA GATATGGACA CGAAGTTGGC 
GACGAGACCC TAAAGTTACT CGCTGATACC TGTAGAGCAG TACTCGGAAC TCAATATGAA 
GCGGCGCGAG TGGGGGGCGA AGAGTTTCTG ATCTTACTGC CGCATACCGA TAAGGCTCAA 
GCCCTTAAGG TTGCCCAACA CTTAGTTAAT CAGGTTCGCA ATGCTGACTT TAGCCCTTTC 
CCTGAAGGGT TCTCGATAAC AATAAGTGCC GGTGTTTCAA GCCTTAGCGA AACTGACGAT 
AAGCTTTCCC AACTGCTGAA ACGAGCCGAT GAGGCACTTT ACTTAGCCAA AAAACAAGGC 
CGTGACCAAG TTAAGATGAA TTAA 

 

Protein sequence

MPKLIQLLLI SLAFIMASVS HYAVSATTDL QRADELFDLL DSGVVEKNLE KKQYLEELTP 
LVPKNDLARQ LRLARTICWS YNMQDDAEIA QALLFAKQAL TRPELTNFPD DKLDLELCYA 
WFSEQKGDVD TALSYYNRLV IDAYKLENLR LMADVRMMRG YLTSFQGNYT QGLEDLMTAQ 
TLYKSLNVTV WVQHSLYEIA TIYRRLGDQE NAIRYFNQLH KSHIDNQEFD KANVVISSIA 
IAEEERKSFT QAKKLFLESY HYWNTNQNGF KKAGVAVNMA GTLIKLGEIN QALKYLDESV 
PFITPSAEGF YNYMQLFYAQ IYLELGQFEQ AHKSIALARA AFERVKSLRG LVQVQLVESQ 
IFLMQDNWQA AYESLYKYME LHMELDKKLF SRYNTEMRTR FNAEQIEAEN RHLVENHKLK 
ELELAMLEQN KVQQWIIIFM GSIILIIIST FTYKQSQKNK LLSALALTDD LTQLPNRRYI 
YTQAQDYFES AIKNQQALSC ISFDADYFKL INDRYGHEVG DETLKLLADT CRAVLGTQYE 
AARVGGEEFL ILLPHTDKAQ ALKVAQHLVN QVRNADFSPF PEGFSITISA GVSSLSETDD 
KLSQLLKRAD EALYLAKKQG RDQVKMN