| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_3176 |
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| Symbol | |
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| ID | 5663565 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | - |
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| Start bp | 3894376 |
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| End bp | 3895068 |
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| Gene Length | 693 bp |
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| Protein Length | 230 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 641237835 |
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| Product | pseudouridine synthase |
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| Protein accession | YP_001503027 |
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| Protein GI | 157962993 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.0000150331 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | GTGCGTTTAG ATAAATTTAT TTGTGAATCA ACTTCACACT CTCGCGTTTC TGCCAAGAAA
GCCCTTCATC GTGGTGATGT CACTTGTAAT GGTGAAGTCG TTAAAAACTC TGGTTTTAAA
GTCACCGATG AGCATGAGAT CCGTCTTGAG GGTGAGGTGC TAACGATAAT TGGCCCGCGC
TTTATCATGC TAAACAAGCC AGTCGATACT ATCTGTTCAA CCATAGATGA AGAGTATCCA
TCGGTGATCA GCCTGTTGGA TGTGAGCCGT CCTGAAGATT TGCATATTGC TGGCCGTTTA
GATGCCGACA CTACAGGTCT GGTTTTGATC ACCACAGATG GTCAATGGTC GCATAAAATC
ACCTCGCCAA AGAAAGAGTG TGGCAAGCGC TACCTATTAG AGACGGCTGA TCCATTAAGT
GAAGCTCTAG TGCAGCAATT TGCCGATGGC TTGCAACTCA ATAATGAAGA TGGTCTGACT
AAACCGGCAG AGCTTGAGAT GTTAGGCTCG AACCAAGCGC GTTTGACCAT TACCGAAGGT
AAATATCATC AAGTTAAGCG TATGCTAGCC GCGGTAGGAA ATAAGGTGAC TAAGCTACAC
CGTGAGAGCG TGGGCGCTAT CGAACTCGAC CCAAGCCTTG AGCTGGGTGA ATGGCGATAC
CTGACTGATG CTGAAATAAA ATCAGTTAAG TAA
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| Protein sequence | MRLDKFICES TSHSRVSAKK ALHRGDVTCN GEVVKNSGFK VTDEHEIRLE GEVLTIIGPR
FIMLNKPVDT ICSTIDEEYP SVISLLDVSR PEDLHIAGRL DADTTGLVLI TTDGQWSHKI
TSPKKECGKR YLLETADPLS EALVQQFADG LQLNNEDGLT KPAELEMLGS NQARLTITEG
KYHQVKRMLA AVGNKVTKLH RESVGAIELD PSLELGEWRY LTDAEIKSVK
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