| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_3120 |
|---|
| Symbol | |
|---|
| ID | 5663509 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella pealeana ATCC 700345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009901 |
|---|
| Strand | - |
|---|
| Start bp | 3822410 |
|---|
| End bp | 3823972 |
|---|
| Gene Length | 1563 bp |
|---|
| Protein Length | 520 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 641237760 |
|---|
| Product | AbgT putative transporter |
|---|
| Protein accession | YP_001502971 |
|---|
| Protein GI | 157962937 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG2978] Putative p-aminobenzoyl-glutamate transporter |
|---|
| TIGRFAM ID | [TIGR00819] p-Aminobenzoyl-glutamate transporter family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGCAG ATAAACAGGC GCTTGGAGAA CAAGGGCCAC AAGGGATGTT AGGTAAAGCA
TTAGACAGCA TTGAAAGGGT CGGCAATAAG TTACCGGATC CTGCAATGCT ATTTTTAATT
TTGATGTTTG CCGTATGGGC ACTATCAGCG TTGCTATCGG GGGTGAGCTT TGAGGCCATC
GACCCGACGA CTAACTCTCC AATTGTGGTT CATAACCTAC TAACCGCAGA AGCGCTAACT
AAGTTCTTAA CCTCGATGGT AACGACGTTC ACGGCATTCG CTCCTTTAGG TGTGGTGTTG
GTGGCCATGC TAGGTGTGGG CGTAGCTGAG CATTCAGGCT TTATTAACAC TGCGCTAAAA
CGCATGTTAA AAATCACCCC GGCTAAATTT TTAACTCCGG CAGTGGTTTT GGTCGGTATT
ATCTCTCACA CCGCAACCGA TGCGGGTTAT GTGGTGGTTA TTCCTCTTGC TGGCGTGATC
TTCTTTACCG TTGGTCGCCA TCCTCTAGCG GGTATAGCCG CAGCGTTTGC TGGTGTGTCA
GGTGGTTTTT GCGCCAACTT TATCCCGTCA GGAATTGACC CATTACTGCA AAGCTTTACC
CAAGCTGCGG CACAAATTGT TGACCCGACA ATTGAAGTCA ACCCACTGAA CAACTGGTTC
TTCGCGGCAT CGTCATGTAT CCCTATTACG TTAGTTATCT GGTATCTAAC AGATAAAGTA
TTGGAGCCTC GCTTAAACCG CACTCACAAG GTTAACCGCG AAGAGGTGGA TCTTCCGGCG
ATGGAAGAGG AGAAGCCGTC TGAGATTAAA GCATTCCGCG TTGCTAGCTT AGTGATGGTT
GTTGCAATTG CAGCTTTCTT CTCATTAACT GTGCCAGAGA CTTCAACACT GCGTGATGCG
AACGGTTCAT TGACGAGCTT TAAGGCACCT TTGATGCAGT CAATTGTGCC GCTGATCTTT
ATCTTCTTTA TGTTACCTGG CCTCGTATAT GGCTACATGA CTGGTGCCTT TAAAACATCA
GGGGATGTTG TACAGGCGAT GTCTAAGTCG ATGAGTGGCA TGTCTCATTA CATCGTCATG
GCATTTTTCT GTGCTCAGTT TGTAGCAGCA TTTTCGGCAT CTAACCTCGG TGCTTTAATC
GCAGTTGAAG GTGCTGGTGG ATTAAAAGCC TTAAACTTAC CGGCTGAAAT TACCGTAGTG
GGTATGATTA TCCTAGTTGG CTTTGTGAAC TTGTTTGTGG GCTCATCATC GGCTAAGTGG
GCTTTGATTG GTCCAGTTCT AGTGCCTATG TTGATGCAGC TTAATATCAG TCCAGATCTA
TCTCAGGCGG CATACCGCGT AGGTGATTCG AGCTCTAATA TTATTACGCC GCTGATGCCA
TACTTTCCGT TAGTGGTAGT TTACTGTCAA CGCTATGTGA AGAATATCGG TATTGGTACC
TTAATCTCTA TGATGCTGCC GTTTAGCTTA GCGTTAATGT CTATATGGAG TGTTTGGTTG
TTGGCTTACT GGGCTCTTGG TTTCCCATTG GGCTTAGGTG CAAGTTATAC CTATGGTTTG
TAA
|
|---|
| Protein sequence | MKADKQALGE QGPQGMLGKA LDSIERVGNK LPDPAMLFLI LMFAVWALSA LLSGVSFEAI
DPTTNSPIVV HNLLTAEALT KFLTSMVTTF TAFAPLGVVL VAMLGVGVAE HSGFINTALK
RMLKITPAKF LTPAVVLVGI ISHTATDAGY VVVIPLAGVI FFTVGRHPLA GIAAAFAGVS
GGFCANFIPS GIDPLLQSFT QAAAQIVDPT IEVNPLNNWF FAASSCIPIT LVIWYLTDKV
LEPRLNRTHK VNREEVDLPA MEEEKPSEIK AFRVASLVMV VAIAAFFSLT VPETSTLRDA
NGSLTSFKAP LMQSIVPLIF IFFMLPGLVY GYMTGAFKTS GDVVQAMSKS MSGMSHYIVM
AFFCAQFVAA FSASNLGALI AVEGAGGLKA LNLPAEITVV GMIILVGFVN LFVGSSSAKW
ALIGPVLVPM LMQLNISPDL SQAAYRVGDS SSNIITPLMP YFPLVVVYCQ RYVKNIGIGT
LISMMLPFSL ALMSIWSVWL LAYWALGFPL GLGASYTYGL
|
|---|
| |