| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_3107 |
|---|
| Symbol | |
|---|
| ID | 5663496 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella pealeana ATCC 700345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009901 |
|---|
| Strand | + |
|---|
| Start bp | 3809096 |
|---|
| End bp | 3810370 |
|---|
| Gene Length | 1275 bp |
|---|
| Protein Length | 424 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 641237747 |
|---|
| Product | rRNA (guanine-N(2)-)-methyltransferase |
|---|
| Protein accession | YP_001502958 |
|---|
| Protein GI | 157962924 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG2813] 16S RNA G1207 methylase RsmC |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGCCCTA ATTTATTTGG TACTTATTGG CATATGACGA CACAGTTTTC AGTATCGGGT
ATTGAACTCG AACTCTTCCG TTACCCTAGC AGACAAGAGT CTAACCTGCA GGCGTGGGAC
GCCGCCGATG AGCACCTTAT AAAGCACTTA ATCGATACAG AACAAACCAG CATTAGTACG
GCGGTTGTGA ACGATGGTTT CGGTGCATTA ACTGCAGGCT TATTATCAAT TAACCCTAGC
TGGCCACTGA CATTAGAAAC GGATGCCAAG ACCAGCCAGT TGGGCACAAG CCAAAACCTA
ACCCGTAACC AGCTATCGCA AGAGTCGATA ACTTGGGTGA ATAGCCGTGA TGAGCTGCCT
CAGGTAATTG AGTTGGTTTT GATGAAGCTG CCTAAAAACC TAAACTACTT TAGCCACCAG
CTAAATAGGC TTTCTCATGT GCTACCAGCA GGTACACAAG TTTTAATTGG CGCGAAAGCA
AAATCAATTA ATAAGTCGCT ACTGGAAACT ATCGAAAAGA ATTTAGGCCC TGCTAGTGCC
AGCCTGACAT GGAAGAAAAC TCGAGTCATC ACCTGTATCG CAGATGGTAA GGCTCGTGCG
TTACCTAAAG CAACCACTTG GTCTGTACCT GAGTTTAAAT TGCAGATCAG TAATCTCAGT
AACGTATTTG CCGCCAACAA GCTCGATATT GGTGCACGCA TAATGCTCGA TAACATGCCA
AAAGGTGACT ACAAGTCGAT TGTCGACTTG GGCTGCGGTA ACGGCATCTT AGGCTTGCAC
GCGAAGCAAG TCTTTCCAGA AGCTTATATT CACTTTATCG ATGACTCTGA GATGGCTGTC
GCATCGGCTA GAGAAAACTG GGCACTCAAC AAACTGGATA ACCCTGCATT GGTTGGTGAA
CAAGCAACGT TTGGCTGGGA TGACTGTTTA ACCAATATGA GTGAAGGCTT CCGCCCAGAT
CTTGTACTGT GTAATCCTCC GTTCCACCAA GGTGAGGCTA TTACCGATCA TATTGCTTGG
CAGATGTTTT TAGATGCCTT TAGACGCTTA AAAAATGGCG GAATATTGCA TGTTGTGGGT
AATCGTCACT TGGCCTATCA CGTCAAACTG CAGCGGATCT TTAAGAACTG CACCACGGTT
GCATCGAACG GTAAGTTTGT TATTTTACAG GCACAAAAAA TCAGTAAAAA GGCACAAGAG
GCTGAGGTGG AGCAAGCTTT TGACACTGAG ACGCCACATC CGCAAAGTGC ATTATACGGT
AAGCCAAAAG CCTAA
|
|---|
| Protein sequence | MRPNLFGTYW HMTTQFSVSG IELELFRYPS RQESNLQAWD AADEHLIKHL IDTEQTSIST
AVVNDGFGAL TAGLLSINPS WPLTLETDAK TSQLGTSQNL TRNQLSQESI TWVNSRDELP
QVIELVLMKL PKNLNYFSHQ LNRLSHVLPA GTQVLIGAKA KSINKSLLET IEKNLGPASA
SLTWKKTRVI TCIADGKARA LPKATTWSVP EFKLQISNLS NVFAANKLDI GARIMLDNMP
KGDYKSIVDL GCGNGILGLH AKQVFPEAYI HFIDDSEMAV ASARENWALN KLDNPALVGE
QATFGWDDCL TNMSEGFRPD LVLCNPPFHQ GEAITDHIAW QMFLDAFRRL KNGGILHVVG
NRHLAYHVKL QRIFKNCTTV ASNGKFVILQ AQKISKKAQE AEVEQAFDTE TPHPQSALYG
KPKA
|
|---|
| |