Gene Spea_3071 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSpea_3071 
SymbolsecD 
ID5663461 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella pealeana ATCC 700345 
KingdomBacteria 
Replicon accessionNC_009901 
Strand
Start bp3766056 
End bp3767870 
Gene Length1815 bp 
Protein Length604 aa 
Translation table11 
GC content47% 
IMG OID641237712 
Productpreprotein translocase subunit SecD 
Protein accessionYP_001502923 
Protein GI157962889 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0342] Preprotein translocase subunit SecD 
TIGRFAM ID[TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.143889 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGAGAAC AGAAAAATAC CACTATTTTG AACCACTACT CAGCATGGAA ATATGTATTG 
TTAGTGGTCA CTATCATCAT CATGTTGTTC AGCGCGCTTC CGACCTTTTT TGGTGAGGAT
GCAGCGGTTC AGATCAGTAA AGAAGCCGGT TTAAAGGTCA ATGCGTTAGA GCTTCACCAA
TTACTGATTG CCCAAGGGGT CAAAGTTAAG CGTATCGATC AAACTTCTGG GCAGACGCTG
ATTGTAATAG ATGATAACTC GCAACAGAGT CAGCTTAAAT CATTCCTTAG CAACCAGGTC
AAAGACCCGA CAGAGATAAC TTTGACCTTA GCGCCGGCAG CGCCAAACTG GTTATTATCC
CTGGGCTTCT CGCCAATTAA GCTAGGGCTC GATCTGCGCG GGGGAGTGCA GTTCTTGCTT
GATGTGGAGA TTGAGCCTGT CTATAAGCTG CAATACAACA CCTTTATTGA ATCGGTTAGG
CAGTTTGTAC GTCAAGAGGC TTTATATGGT GTGACCGTTC AGCAGCAAGT CGATGGCAAT
GTGCAAATTT CGGCTCAAGA ACTCGAGCAA AGAGGGGCTG TCAGGCAGTT TATCAATAAA
CAATACCCTA ATTGGCAAGT TTCAAACTCA GGTGAGCAGT CTTTGAGTGT TGGTATGACT
GAAGCCGAGA AGATTACTAT CCGCGATCTC ACCGTTAAAC AAAACTTGCA GATCATGCGC
AGCCGTATTG AGCAGTTAGG GATCACTGAA GCAGTCGTGC AGCGTCAAGG TGAACACCGC
ATCCGTATCG AACTGCCTGG AGTACAAGAT CCCGCCGCGG CCAAGTCTGT GATTGGCGCC
ACTGCAAGCC TTGCTTTTTA TCAGGTGAAG CAGCCGGGTT CTGTCAACGC AAAGACACTT
AAAGATGAGC AAGGTAAGCC AGTTTATGTG GCAAGACGAG CGGTTTTAGG CGGCGAGCAT
ATCGTCGATG CTAGGGCATC CCTTGGCGAG ATGGGCTTAC CTGAAGTGGT GATCCATTTA
GACAGGGAAG GTGGAAGTAT GATGTCTGAC TTTTCTCGGG ACAATATCGG TAAGCCGATG
GCGACTTCTT ACAGTGAATA TAGCCGTGAT GACAATGGTC AAATTAGGCA AACAACTGAA
GTCATAAGTG TCGCGACCAT TCAAGCGCAA TTGGGCGATC GCTTTAGTAT TACTGGCGCT
GGGGATTACG CCGAGGCTCA GCAGCTAGCG CTTTTACTCA GAGCAGGCTC AATGACAGCC
CCTGTGACCA TTGTTGAGGA GCGAACCATC GGCCCAAGTC TTGGTGAAGA AAACATTACC
AATGGTTTCT CCGCACTTGC TTTAGGCATG GGAGTCACCT TGCTGTTTAT GGGGCTTTGG
TATCGCCGTT TAGGCTGGAT AGCGAACGTA GCGCTAGTCG CCAACATGAT CCTTATTTTT
GGTCTTATGG CACTGATCCC TGGCGCGGTT TTAACATTGC CGGGTATTGC TGGCCTAGTG
TTAACCGTCG GCATGGCTGT TGATACCAAT GTACTTATTT TTGAGCGAAT TAAAGATAAG
TTAAAAGAAG GGCGTAGCTT TGCCCACGCG ATAGACAGAG GCTTTGATAG TGCATTTTCA
ACCATTGTTG ACGCTAACTT CACCACAATG ATCACTGCCG TGGTGCTTTA CGCCATAGGT
AATGGCCCTA TTCAGGGCTT TGCCCTAACC CTAGGTTTAG GTCTTTTAAC CAGTATGTTT
ACCGGAATAT TTGCGTCTCG TGCGCTTGTT AACTGGGCAT ATGGTCGTGA TTTTAGTCGT
AACGTGAAGG TGTAA
 
Protein sequence
MREQKNTTIL NHYSAWKYVL LVVTIIIMLF SALPTFFGED AAVQISKEAG LKVNALELHQ 
LLIAQGVKVK RIDQTSGQTL IVIDDNSQQS QLKSFLSNQV KDPTEITLTL APAAPNWLLS
LGFSPIKLGL DLRGGVQFLL DVEIEPVYKL QYNTFIESVR QFVRQEALYG VTVQQQVDGN
VQISAQELEQ RGAVRQFINK QYPNWQVSNS GEQSLSVGMT EAEKITIRDL TVKQNLQIMR
SRIEQLGITE AVVQRQGEHR IRIELPGVQD PAAAKSVIGA TASLAFYQVK QPGSVNAKTL
KDEQGKPVYV ARRAVLGGEH IVDARASLGE MGLPEVVIHL DREGGSMMSD FSRDNIGKPM
ATSYSEYSRD DNGQIRQTTE VISVATIQAQ LGDRFSITGA GDYAEAQQLA LLLRAGSMTA
PVTIVEERTI GPSLGEENIT NGFSALALGM GVTLLFMGLW YRRLGWIANV ALVANMILIF
GLMALIPGAV LTLPGIAGLV LTVGMAVDTN VLIFERIKDK LKEGRSFAHA IDRGFDSAFS
TIVDANFTTM ITAVVLYAIG NGPIQGFALT LGLGLLTSMF TGIFASRALV NWAYGRDFSR
NVKV