Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Spea_3071 |
Symbol | secD |
ID | 5663461 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella pealeana ATCC 700345 |
Kingdom | Bacteria |
Replicon accession | NC_009901 |
Strand | - |
Start bp | 3766056 |
End bp | 3767870 |
Gene Length | 1815 bp |
Protein Length | 604 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 641237712 |
Product | preprotein translocase subunit SecD |
Protein accession | YP_001502923 |
Protein GI | 157962889 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0342] Preprotein translocase subunit SecD |
TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family [TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.143889 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGAGAAC AGAAAAATAC CACTATTTTG AACCACTACT CAGCATGGAA ATATGTATTG TTAGTGGTCA CTATCATCAT CATGTTGTTC AGCGCGCTTC CGACCTTTTT TGGTGAGGAT GCAGCGGTTC AGATCAGTAA AGAAGCCGGT TTAAAGGTCA ATGCGTTAGA GCTTCACCAA TTACTGATTG CCCAAGGGGT CAAAGTTAAG CGTATCGATC AAACTTCTGG GCAGACGCTG ATTGTAATAG ATGATAACTC GCAACAGAGT CAGCTTAAAT CATTCCTTAG CAACCAGGTC AAAGACCCGA CAGAGATAAC TTTGACCTTA GCGCCGGCAG CGCCAAACTG GTTATTATCC CTGGGCTTCT CGCCAATTAA GCTAGGGCTC GATCTGCGCG GGGGAGTGCA GTTCTTGCTT GATGTGGAGA TTGAGCCTGT CTATAAGCTG CAATACAACA CCTTTATTGA ATCGGTTAGG CAGTTTGTAC GTCAAGAGGC TTTATATGGT GTGACCGTTC AGCAGCAAGT CGATGGCAAT GTGCAAATTT CGGCTCAAGA ACTCGAGCAA AGAGGGGCTG TCAGGCAGTT TATCAATAAA CAATACCCTA ATTGGCAAGT TTCAAACTCA GGTGAGCAGT CTTTGAGTGT TGGTATGACT GAAGCCGAGA AGATTACTAT CCGCGATCTC ACCGTTAAAC AAAACTTGCA GATCATGCGC AGCCGTATTG AGCAGTTAGG GATCACTGAA GCAGTCGTGC AGCGTCAAGG TGAACACCGC ATCCGTATCG AACTGCCTGG AGTACAAGAT CCCGCCGCGG CCAAGTCTGT GATTGGCGCC ACTGCAAGCC TTGCTTTTTA TCAGGTGAAG CAGCCGGGTT CTGTCAACGC AAAGACACTT AAAGATGAGC AAGGTAAGCC AGTTTATGTG GCAAGACGAG CGGTTTTAGG CGGCGAGCAT ATCGTCGATG CTAGGGCATC CCTTGGCGAG ATGGGCTTAC CTGAAGTGGT GATCCATTTA GACAGGGAAG GTGGAAGTAT GATGTCTGAC TTTTCTCGGG ACAATATCGG TAAGCCGATG GCGACTTCTT ACAGTGAATA TAGCCGTGAT GACAATGGTC AAATTAGGCA AACAACTGAA GTCATAAGTG TCGCGACCAT TCAAGCGCAA TTGGGCGATC GCTTTAGTAT TACTGGCGCT GGGGATTACG CCGAGGCTCA GCAGCTAGCG CTTTTACTCA GAGCAGGCTC AATGACAGCC CCTGTGACCA TTGTTGAGGA GCGAACCATC GGCCCAAGTC TTGGTGAAGA AAACATTACC AATGGTTTCT CCGCACTTGC TTTAGGCATG GGAGTCACCT TGCTGTTTAT GGGGCTTTGG TATCGCCGTT TAGGCTGGAT AGCGAACGTA GCGCTAGTCG CCAACATGAT CCTTATTTTT GGTCTTATGG CACTGATCCC TGGCGCGGTT TTAACATTGC CGGGTATTGC TGGCCTAGTG TTAACCGTCG GCATGGCTGT TGATACCAAT GTACTTATTT TTGAGCGAAT TAAAGATAAG TTAAAAGAAG GGCGTAGCTT TGCCCACGCG ATAGACAGAG GCTTTGATAG TGCATTTTCA ACCATTGTTG ACGCTAACTT CACCACAATG ATCACTGCCG TGGTGCTTTA CGCCATAGGT AATGGCCCTA TTCAGGGCTT TGCCCTAACC CTAGGTTTAG GTCTTTTAAC CAGTATGTTT ACCGGAATAT TTGCGTCTCG TGCGCTTGTT AACTGGGCAT ATGGTCGTGA TTTTAGTCGT AACGTGAAGG TGTAA
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Protein sequence | MREQKNTTIL NHYSAWKYVL LVVTIIIMLF SALPTFFGED AAVQISKEAG LKVNALELHQ LLIAQGVKVK RIDQTSGQTL IVIDDNSQQS QLKSFLSNQV KDPTEITLTL APAAPNWLLS LGFSPIKLGL DLRGGVQFLL DVEIEPVYKL QYNTFIESVR QFVRQEALYG VTVQQQVDGN VQISAQELEQ RGAVRQFINK QYPNWQVSNS GEQSLSVGMT EAEKITIRDL TVKQNLQIMR SRIEQLGITE AVVQRQGEHR IRIELPGVQD PAAAKSVIGA TASLAFYQVK QPGSVNAKTL KDEQGKPVYV ARRAVLGGEH IVDARASLGE MGLPEVVIHL DREGGSMMSD FSRDNIGKPM ATSYSEYSRD DNGQIRQTTE VISVATIQAQ LGDRFSITGA GDYAEAQQLA LLLRAGSMTA PVTIVEERTI GPSLGEENIT NGFSALALGM GVTLLFMGLW YRRLGWIANV ALVANMILIF GLMALIPGAV LTLPGIAGLV LTVGMAVDTN VLIFERIKDK LKEGRSFAHA IDRGFDSAFS TIVDANFTTM ITAVVLYAIG NGPIQGFALT LGLGLLTSMF TGIFASRALV NWAYGRDFSR NVKV
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