| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_3053 |
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| Symbol | prfC |
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| ID | 5663443 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | - |
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| Start bp | 3743934 |
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| End bp | 3745514 |
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| Gene Length | 1581 bp |
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| Protein Length | 526 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 641237692 |
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| Product | peptide chain release factor 3 |
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| Protein accession | YP_001502905 |
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| Protein GI | 157962871 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG4108] Peptide chain release factor RF-3 |
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| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00503] peptide chain release factor 3 |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.00432214 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCAGGCT ATAAAGTTGA GGTCGACAAA CGTCGCACTT TTGCCATCAT CTCTCACCCA
GATGCGGGTA AAACCACCAT TACTGAAAAG GTTCTTTTAT TCGGAAACGC GTTACAAAAG
GCGGGTACGG TAAAAGGCAA AAAGTCAGGT CAGCACGCTA AGTCTGACTG GATGGAGATG
GAAAAAGATC GTGGGATCTC AATTACGACC TCTGTAATGC AGTTTCCATA CAGCGACGCG
CTGGTAAACT TGCTAGATAC GCCTGGTCAC GAAGACTTCT CTGAAGATAC TTACCGTACA
TTAACGGCGG TAGACTCATG CTTAATGGTT ATCGACTCAG CGAAAGGTGT TGAGCAACGT
ACTATTAAAC TAATGGAAGT CACTCGTTTA CGTGATACTC CAATTGTTAC CTTCATGAAC
AAGCTTGACC GTGATATTCG CGATCCAATC GAGTTGATGG ATGAAGTTGA AGAAGTGCTC
AACATTAAGT GCGCACCTAT CACTTGGCCA ATCGGTGCGG GTAAAGAATT CAAAGGTGTT
TATCACCTAT TACGTGATGA AGTGATCCTG TATCAAGGTG GTATGGGGCA TACAATCCAA
GACTCTCGGG TCATCAAGGG GCTAGATAAC CCAGAGCTTG ATGAGGCGAT TGGCAGCTAT
GCTGCTGAAA TCCGTGATGA AATGGAATTG GTTGTTGGCG CGTCACATGA ATTCGATCAC
CAGCAATTCT TAAAAGGCGA ATTAACTCCT GTTTATTTTG GAACTGCGCT AGGTAACTTT
GGCGTCGACC ATATTCTTGA CGGTATCGTT GAGTGGGCAC CAGTCCCACA GCCTCGCGAA
ACTGAAATTC GTGAAGTTCA ACCTGAAGAA GAAAAGTTCA GTGGTTTCGT ATTTAAGATC
CAAGCGAATA TGGATCCTAA GCATCGAGAT CGTGTTGCCT TTATGCGAAT TTGTTCAGGC
CGTTACGAGC AAGGCATGAA GATGCATCAT GTACGTCTTG GTAAAGATGT TAACGTCAGT
GACGCGTTGA CCTTTATGGC CGGCGATCGT AACCGCGCCG AAGCTGCGTA CCCAGGCGAT
ATTATCGGCT TACATAACCA TGGCACAATC CGTATTGGTG ATACCTTTAC CCAAGGCGAG
AAGCTTCGCT TTACTGGTGT ACCAAACTTT GCGCCAGAGA TGTTCCGTCG TATTCGTTTA
AAAGATCCGT TGAAGCAGAA GCAGTTGCTT AAAGGTCTGG TACAGCTTTC AGAAGAAGGC
GCAGTACAGG TGTTTAGACC ACTCGATAGT AATGACTTAA TTGTGGGTGC CGTTGGTGTG
CTGCAGTTTG AGGTTGTTGT AGGTCGTCTA AAGACTGAAT ATAAAGTTGA AGCGATTTAC
GAAGCGATCA GTGTTGCGAC TGCGCGTTGG GTGTACTGTG ACGATCATAA GAAGCTCGAT
GAGTTCAAGC GTAAGTGCAG CATGAACTTA GCGTTAGATG GTGGTGACAA CCTGACTTAT
ATCGCACCGA CTATGGTTAA TCTTAACCTG TCGATGGAAC GTTACCCAGA TATTGAATTT
GCTAAGACGC GCGAAAACTA A
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| Protein sequence | MSGYKVEVDK RRTFAIISHP DAGKTTITEK VLLFGNALQK AGTVKGKKSG QHAKSDWMEM
EKDRGISITT SVMQFPYSDA LVNLLDTPGH EDFSEDTYRT LTAVDSCLMV IDSAKGVEQR
TIKLMEVTRL RDTPIVTFMN KLDRDIRDPI ELMDEVEEVL NIKCAPITWP IGAGKEFKGV
YHLLRDEVIL YQGGMGHTIQ DSRVIKGLDN PELDEAIGSY AAEIRDEMEL VVGASHEFDH
QQFLKGELTP VYFGTALGNF GVDHILDGIV EWAPVPQPRE TEIREVQPEE EKFSGFVFKI
QANMDPKHRD RVAFMRICSG RYEQGMKMHH VRLGKDVNVS DALTFMAGDR NRAEAAYPGD
IIGLHNHGTI RIGDTFTQGE KLRFTGVPNF APEMFRRIRL KDPLKQKQLL KGLVQLSEEG
AVQVFRPLDS NDLIVGAVGV LQFEVVVGRL KTEYKVEAIY EAISVATARW VYCDDHKKLD
EFKRKCSMNL ALDGGDNLTY IAPTMVNLNL SMERYPDIEF AKTREN
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