| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_3047 |
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| Symbol | deoA |
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| ID | 5663437 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | - |
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| Start bp | 3737259 |
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| End bp | 3738590 |
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| Gene Length | 1332 bp |
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| Protein Length | 443 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 641237686 |
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| Product | thymidine phosphorylase |
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| Protein accession | YP_001502899 |
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| Protein GI | 157962865 |
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| COG category | [F] Nucleotide transport and metabolism |
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| COG ID | [COG0213] Thymidine phosphorylase |
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| TIGRFAM ID | [TIGR02643] thymidine phosphorylase
[TIGR02644] pyrimidine-nucleoside phosphorylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0184522 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTTTTAG CTCAAGAAAT TATTCGTAAA AAACGTAATG CTGAGACTCT TTCGACTGAA
GAAATTCAAT TCTTCGTTAA AGGGATCACC AACAATACAG TTTCAGAAGG TCAGATCGCA
GCCTTAGGCA TGGCGGTCTA TTTCAATGAC ATGAACATGG ATGAACGTAT TGCGTTAACT
ACGGCGATGC GTGACTCCGG CACAGTTCTC AACTGGCAAT CACTGGATCT TAATGGTCCA
ATTATCGATA AGCACTCAAC TGGCGGAGTG GGGGATGTCA TTAGTTTGAT GTTAGGCCCT
ATGGCGGCTG CGTGTGGTGG TTATGTACCC ATGATCTCGG GTCGTGGCCT TGGCCATACC
GGTGGTACTC TCGATAAGTT TGATGCCATT CCAGGTTATA ATACCGAGCC GGACAGCGCA
CTGTTTCGCA AGGTAGTAAA AGAGGCTGGC GTGGCCATTA TTGGTCAAAC TGGCGATCTG
GTTCCTGCCG ATAAACGTTT CTATTCTATT CGCGATAATA CCGCAACGGT TGAGTCCATC
TCTTTAATCA CAGCTTCCAT TCTTTCTAAA AAGCTCGCCG CAGGTTTAGA TGCATTAGCC
ATGGACGTTA AAGTCGGTAC TGGCGCATTT ATGCCAACCT ATGAAGCGTC AGAAGAGTTA
GCGCGCAGTA TTACTGCCGT TGCTAATGGT GCAGGCACTA AGACAACAGC ATTACTCACC
GACATGAACC AGGTATTGGC ATCATGTGCC GGTAACGCAT TAGAAGTTAA AGAAGCAGTC
GACTTTATGA CTGGTGCATA TCGCAACCCA CGCCTTTACG AAGTGACTAT GGGCTTGTGT
GCAGAAATGC TGGTATTAGG TGGCCTTGCA AGCAACGAGA GCGAAGCTCG CGTTAAGTTA
AATACCGTAC TTGATAACGG TAAGGCGGCT GAGATATTCG GCCGTATGGT TTCAGGTTTA
GGTGGTCCAG CTGATTTCGT TGAGAACTAC AGCAAGTACC TGCCTGATTC GCAAATTATT
CGTCCTGTTT ACGCGGATAG ATCCGGTTTT GCTTCGGCAA TGGATACCCG TGAACTTGGA
CTTGCAGTAG TGACCTTGGG CGGTGGTCGC CGCAAGCCTG GGGATGCTCT CGATTACAGT
GTTGGACTTT CTAAAGTTTG CGCACTAGGT GACGAGATTA ACCCTGAGCA ACCTATTGCA
TTTATTCACG CCCAATCTGA AAGCGCCTTT GCTGAAGCGG AAGCTGCAGT GAAAAAAGCG
ATTCATATTG GCGACAGCAA ACCAGAGAAA ACTCCGGAAA TATATCGTTA TATCCGCGAG
TCAGATCTGT AA
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| Protein sequence | MFLAQEIIRK KRNAETLSTE EIQFFVKGIT NNTVSEGQIA ALGMAVYFND MNMDERIALT
TAMRDSGTVL NWQSLDLNGP IIDKHSTGGV GDVISLMLGP MAAACGGYVP MISGRGLGHT
GGTLDKFDAI PGYNTEPDSA LFRKVVKEAG VAIIGQTGDL VPADKRFYSI RDNTATVESI
SLITASILSK KLAAGLDALA MDVKVGTGAF MPTYEASEEL ARSITAVANG AGTKTTALLT
DMNQVLASCA GNALEVKEAV DFMTGAYRNP RLYEVTMGLC AEMLVLGGLA SNESEARVKL
NTVLDNGKAA EIFGRMVSGL GGPADFVENY SKYLPDSQII RPVYADRSGF ASAMDTRELG
LAVVTLGGGR RKPGDALDYS VGLSKVCALG DEINPEQPIA FIHAQSESAF AEAEAAVKKA
IHIGDSKPEK TPEIYRYIRE SDL
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