| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_3035 |
|---|
| Symbol | |
|---|
| ID | 5663425 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella pealeana ATCC 700345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009901 |
|---|
| Strand | + |
|---|
| Start bp | 3721676 |
|---|
| End bp | 3722407 |
|---|
| Gene Length | 732 bp |
|---|
| Protein Length | 243 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 641237674 |
|---|
| Product | SNARE associated Golgi protein |
|---|
| Protein accession | YP_001502887 |
|---|
| Protein GI | 157962853 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG0586] Uncharacterized membrane-associated protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTAGATT CATTTGTCTC CGTCATTACA GCCCTATGGC AACAAGACTT CGCTTCACTG
CAAAGCCCTG GCAGCGCAAC CATGATATAC GTTTGCGTTT TCACCTTAAT CTGGTTAGAG
AGTGCATTTC TTCCCGCAGC CCCCATGCCC TGTGATAGTG TTGTGATACT CTCCGGCAGC
CTAGCCGCTG CTGGAATCAT CAGTTTCCCT ACGGTATTTG CCGCTTTAGT CATTGCTGGC
GCAACAGGGA GCTGGCTAGC TTTCATTCAA GGTCGATGGT TACACAGACT ACCTAAAATA
CAGCGTTGGA TCGATGCCGT ACCAGAAAAT CGTATGAAAA CGGTTGATAC TTTACTTAAC
AAACACGGAT TATTAGCCCT GTTTACCGCG CGCTTTATTC CTGTTGTGCG CCCATTATTA
CCATTAATGA TGGGGCTTCA TATTAAGAAA GTAACTAGTT TTCACTACTT TGCCTGGTTG
AGCGCCGCTA TTTGGGTTAC GTTACTGCTC GGTTTTGGCT ACGCACTATC CTTCCTGCCT
GAAAACATCG CGCGGGTCGT CACTATGGCG CTAATCATAG CCCCATTCGT GACGCTAGCT
ATCGCTATAG TAAGCCTATT GAGCCGCTTT ATTATTAAGA AAAGACGGAT GAAGAAATTA
CCGGTCGCAG AGCTCATACA AGAAACGGTG CTTGCAAAGC CAGTCACACC ACTAAAGAAA
ACCGCTAAGT AA
|
|---|
| Protein sequence | MLDSFVSVIT ALWQQDFASL QSPGSATMIY VCVFTLIWLE SAFLPAAPMP CDSVVILSGS
LAAAGIISFP TVFAALVIAG ATGSWLAFIQ GRWLHRLPKI QRWIDAVPEN RMKTVDTLLN
KHGLLALFTA RFIPVVRPLL PLMMGLHIKK VTSFHYFAWL SAAIWVTLLL GFGYALSFLP
ENIARVVTMA LIIAPFVTLA IAIVSLLSRF IIKKRRMKKL PVAELIQETV LAKPVTPLKK
TAK
|
|---|
| |