| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_3017 |
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| Symbol | |
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| ID | 5663407 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | + |
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| Start bp | 3698270 |
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| End bp | 3699988 |
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| Gene Length | 1719 bp |
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| Protein Length | 572 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 641237656 |
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| Product | pseudouridine synthase |
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| Protein accession | YP_001502869 |
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| Protein GI | 157962835 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTATTCTG CTCAGCACTG TTTTACCCCT TTTAAATCAG CTATCGATAG TTACGAGCTG
CCACAGCGTT TTACCTTTCC GTTTTACTAT GAGCCGCACC CGCTGTGTTT ATTGGCTGCC
TCAGAGCTAC AAGAATACTT AACCACTCAA ACTGACTGGC AGCATAACTT TGGCTTAGAG
AATGATTCAA ACAAGGATGC TGACACGGCT AAAACTGCGG CCATAGGTAA AATGTTTGGT
GTACTTATCG TGCGAAACCC AAGCGGACAG CTTGGGTATT TAGCGGCGTT TTCTGGCAAG
TTAGCCGAGC AAAACCTACT CAATGGTTTT GTGCCCCCCG TGTTCGATAT GTTAGCTGAG
GAAAGCTTCT TTCATGGCGG CATGCAGGCG CTTAACCAGC TCACAGAGCA ACTAGAAAGT
GCCCAGAATA ATCCTGATAT TGCTAGGCTG ACTGCCGAGT TAGCTCAATT ACGCAGCCAA
GCAGAAAGTG AATTAGAGGC TATTCGTGCG CAAATCATTG AAAATCGCAA AGCGCGTAAA
CTTCGCCGCG CGAGTACTGA AAAGCTGCAA GACACAGACA AGCTAGCCGA GCTTAATGTG
CAATTAGGTA AAGAAAGTGT CGCCGAGAAA TTCCATCTCA AAGCCACTAA ACAAACTTGG
GACACTCGAT GCGATGAAGT TGCCACACAG CTTAACGCGC TAAAGGCTGA AATCTCGGCC
ATCAAAGCGA CCCGCGCCCA ACAATCTAAT GGTCTACAAA AACAGATCTT TGCCCAGTAT
CAGTTTTTAA ATCAGGCTGA TGAGCTAAAA GATCTCAACC AGATTTTTAA AGATAGCCCT
ACACAACAAC CACCAGCCGG AGCCGGCGAG TGCGCTGCGC CTAAACTACT GCAATTTGCT
TTTAGTCATG GTTTAACACC TATTGCTATG GCGGAGTTTT GGTGGGGGTT ATCACCAAAG
TCTGAAATCA AGCAACATAA AAACTTTTAC GGTTCATGCC AGGGTAAATG CCAACCTATT
TTAAGCCATA TGCTTGCTGG GATTGAGATG GATGAAAATC CATTGCTGAC TAACCCTGCC
GAAGGTAAAT CGCTTGAGAT TATCTATCAA GACGAGGTCA TGGCAGTGGT TAACAAACCC
GCCGAATTTC TGTCCGTACC CGGAAAAAAT GTCACCGACT CTGTATATGC TCGCATGAAG
GCGCAATTTC CACAGGCAAC AGGTCCGCTT ATCGTTCATA GGCTGGATAT GTCGACCTCA
GGTTTAATGG TTATTGCACT GACTCGTGAT GCCAACAAGT CTTTGGCGCA GCAGTTTATT
GCCCGCACGG TAGAGAAGCG TTACCTGGCG CAGGTACCTG GTGTTGTGCT GGGTGAAAAA
GGTGAGATCT GTTTGCCACT ACGGGGCGAT ATTGATGACA GACCGAGACA ATTGGTCTGT
TATGAGCACG GCAAGCATGC GCTAACTCAT TGGCAGGTCA AGTCCCGCAG CAACGACGCC
ACTATGTTGT ATTTGTATCC TCACACCGGA CGCACCCATC AACTTCGAGT GCATTGTGCT
CATCATGAAG GCTTACATCT GCCAATTATT GGCGATGACC TTTATGGCAA GAAAGCAAAC
CGCTTACATC TACATGCTCA GCGCTTAGTG CTAAATCACC CTGTTAGCAG AGAAAGATTA
ACTTTTGAGG TTGATGTCGA TTTTAATCAA GAAGACTAA
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| Protein sequence | MYSAQHCFTP FKSAIDSYEL PQRFTFPFYY EPHPLCLLAA SELQEYLTTQ TDWQHNFGLE
NDSNKDADTA KTAAIGKMFG VLIVRNPSGQ LGYLAAFSGK LAEQNLLNGF VPPVFDMLAE
ESFFHGGMQA LNQLTEQLES AQNNPDIARL TAELAQLRSQ AESELEAIRA QIIENRKARK
LRRASTEKLQ DTDKLAELNV QLGKESVAEK FHLKATKQTW DTRCDEVATQ LNALKAEISA
IKATRAQQSN GLQKQIFAQY QFLNQADELK DLNQIFKDSP TQQPPAGAGE CAAPKLLQFA
FSHGLTPIAM AEFWWGLSPK SEIKQHKNFY GSCQGKCQPI LSHMLAGIEM DENPLLTNPA
EGKSLEIIYQ DEVMAVVNKP AEFLSVPGKN VTDSVYARMK AQFPQATGPL IVHRLDMSTS
GLMVIALTRD ANKSLAQQFI ARTVEKRYLA QVPGVVLGEK GEICLPLRGD IDDRPRQLVC
YEHGKHALTH WQVKSRSNDA TMLYLYPHTG RTHQLRVHCA HHEGLHLPII GDDLYGKKAN
RLHLHAQRLV LNHPVSRERL TFEVDVDFNQ ED
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