| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_3012 |
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| Symbol | |
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| ID | 5663402 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | - |
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| Start bp | 3692546 |
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| End bp | 3693790 |
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| Gene Length | 1245 bp |
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| Protein Length | 414 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 641237651 |
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| Product | carbohydrate-selective porin OprB |
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| Protein accession | YP_001502864 |
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| Protein GI | 157962830 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3659] Carbohydrate-selective porin |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.339715 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATAAGC TACGTTTAAC CATTTTATTA GGGGGGAGTC TTGCTTGTGT TGGCAGTCTT
TTTAGCATTG ATAGTTATGC CAGTACCAGC TTTGGTAGCC CAAATACTGT CGATAACACT
ATTAAAGATA ACACCCGTAA GAAAGAGTCT TGGCGAGAAA AGCTAGCCAG TGAGCATAAC
CTGACTTTGG GACTGGATTA TCAAGTGCTT GGGTTGTCGG CAAGTTCACC TACCGCAGGT
GGTGATGATA ATTCTGCGGC GGGTGTGGTT CGATTTTATG GCTCTTGGAA CTTAACTGGG
TTAGAGAGCG GCAATGTCGG TGGTCTGGTG TGGAAAGTTG AGCATCGACA TGCTTATACC
GATACCGCTC CAAAAGCCTA TTCATTTATT GAGCCGGGAC TTGGCTATAT CGGCATGATA
GGGCCTGCAT ATAGCGACCA AGGTGGGCGA CTCACCAACC TTTATTGGAA GCAGCAATTC
AATCAAGGAA AAACCGCATT AATGGCGGGC TACTTAGATA CATCAGATTA TGTTGATACC
TACGCGTTAG CGAGCCCGTG GACAGGGTTT ACCAATTTGG CATTTAGTAC CGGCGCGGGC
GCAATAGGTT TACCCGATGA CGGGGTTTTA GGTTTGGCTG TTGGCCATAT GCTCGATGAC
AACTTTTATA TTATTGCCGG CGCAGCCGAC GCGAAAGGGC GCTCAGATAA ACCAAGTGAC
GGCTTTGAGA CTTTGTTTAA TGACCATAAG CTGTTTACCA CATTTGAATT AGGTTGGACT
GCGTCACAGG AACATATCTA TACCGATAAT GTCCATGTGA CTCTGTGGCA TATGGACGGC
GGCACTCAAC ATAATCTCAC TCAGCCAAGT GAAAGTGGCC AAGGGATAAA CTTTTCTGCT
AGCTTCTTTG TTACGCCTCA ATTAATGCCG TTTGTTAGAG GCGGTATATC ACAGGGCGAT
GTCGCACTGT ACGATAATTC GTTAACAATG GGGCTTGGCT ATTTTGGTTT AGGCGGTGAG
AAAAATAACT TAGGCTTTGC GATTAACTTC AGTGAAGTCA ATGAGAATTT AGGCAAGGCC
TATGGCGTTA CTGACGACAA GCAATTTACT TCTGAGGTGT ATTACAACAT GAGTTTGGGG
GAATTTGTGC AGTTAACCCC TAATATTCAG TATATCGACA ATCCAGCGAT TTCAACTGAG
GATGATACTT GGGTTATTGG CTTAAGAGCC AGGGTGAGTT TTTAA
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| Protein sequence | MNKLRLTILL GGSLACVGSL FSIDSYASTS FGSPNTVDNT IKDNTRKKES WREKLASEHN
LTLGLDYQVL GLSASSPTAG GDDNSAAGVV RFYGSWNLTG LESGNVGGLV WKVEHRHAYT
DTAPKAYSFI EPGLGYIGMI GPAYSDQGGR LTNLYWKQQF NQGKTALMAG YLDTSDYVDT
YALASPWTGF TNLAFSTGAG AIGLPDDGVL GLAVGHMLDD NFYIIAGAAD AKGRSDKPSD
GFETLFNDHK LFTTFELGWT ASQEHIYTDN VHVTLWHMDG GTQHNLTQPS ESGQGINFSA
SFFVTPQLMP FVRGGISQGD VALYDNSLTM GLGYFGLGGE KNNLGFAINF SEVNENLGKA
YGVTDDKQFT SEVYYNMSLG EFVQLTPNIQ YIDNPAISTE DDTWVIGLRA RVSF
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