| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_3009 |
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| Symbol | |
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| ID | 5663399 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | - |
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| Start bp | 3688340 |
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| End bp | 3689818 |
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| Gene Length | 1479 bp |
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| Protein Length | 492 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 641237648 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_001502861 |
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| Protein GI | 157962827 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain
[COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.606625 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGCAGTT TTTGGATTAT TTCCATTGTA TGTTTGTTGC TACTGGTTTT GTTAGTATGC
GCACTCTTGT GGCAGCTCAG ACTGCGTCAT CAGCTCAAAC AGTTATTTGA GTTTCTTGAC
TTGAAGGGGA TTAAGCTCCC TTCCAGTAAC GGGTCATTAA CGGCCAAACT CTCCAGCTTA
AAAGATCTAT TCAGTACACT CTATACCCAA AGCAAGCAAT CAGAACGAGA TAAGCTCACT
GAACTCGATA ACCGTTTGAG CATGAAGCGT AAAATGGCCG ATTTAATGCC ATTAAATAAT
GGTAGCTTGG TATTACTCGA TATTTATCGA TTTCGATACG TAAACGATCT GTTTGGCTTT
AACTTTGGCG ACGAGCTACT TAAGCAGATG GCGGTGCGGG TGAAAAGTCT AGCCGCGGAA
GGTTCGTTAA TTGCTAGGAT GAATGAAGAT GAATTTCTCA TCTATTTCAC TAGCGAAATG
ACGGAGCTAC AACTGCAGCA GATCATCGAT AAGTTACAAC TACCCTATGA CATTTTCGGC
AGTATCATAA CCACCAGAGT GCAGATGGGG CACTTGGCAC TAAAGCCTTT TCACAGTGAT
ATTAGCACCA TGCTGCGACG ACTCGACTTG GCGCTAAAAA AAGCTAAGAC TCATGATGTG
GCACTATCTG AATATCTGTT GGGTGATGAT GCGGCGCAGC TTAGAGAAGT GTCGATTATT
AATAGCCTTG CTAAGGCACT GCGTGATGGC GAGCTTTATA TGGTGTATCA GCCAAAACAA
AGCCTCCCCA AAGGGGGCTG TGAGCAAGTA GAGGCCTTAA TGCGATGGCA GCATCCTTTA
TTAGGCAATA TATCTCCTGC TGAATTTATC CCCTTAGCCG AATATTCTGG CATGATCGAT
ATCGTCAGCC AATGGGCCTT AGATCAAGTA TTTGTACAGC AAGCAGTATG GCGCAAAAGT
GATATTAAGC TTCAGGTGGC GGTAAATCTA TCGACTCAAG ATCTGCGTAA CGCCTCTTTG
ATTGCTGGCA TAGAAGCTAG GCTTGAGCAA TACCAATTAA AGGCGAGTGC CATCTCGATA
GAGATCACCG AAAGTAAGTT GATGCAAGAT CTTGAGGGGG CGGTTGAAAC GATTAAGCGA
TTGCGCTGCC TCGGAGTCGA TGTCGCTATC GATGATTTTG GGACTGGTCA TTCTTCTTTG
GCTTACCTTA AATATTTGCC TGTCGATGAG GTTAAGATTG ATAAAGCCTT CTTAGAAGAT
CTTGAAGTCG ATGCTAGGGC TCGACACATA ATGGATACCA GTATTCGATT GGCGAAAGGT
CTTGGCTTTA AGGTGACAGT CGAAGGGGTG GAAACTGAGG ATGTGTTACA GTTATTGCTC
GATATGGGCG TGGATAAAAT TCAAGGTGAT ATCTTCTCTA AGCCCTTAAC AGCGAAAGAG
CTGGGAGCCC GCTGGTTGAA AATAAGTCAG GCAGGCTAA
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| Protein sequence | MGSFWIISIV CLLLLVLLVC ALLWQLRLRH QLKQLFEFLD LKGIKLPSSN GSLTAKLSSL
KDLFSTLYTQ SKQSERDKLT ELDNRLSMKR KMADLMPLNN GSLVLLDIYR FRYVNDLFGF
NFGDELLKQM AVRVKSLAAE GSLIARMNED EFLIYFTSEM TELQLQQIID KLQLPYDIFG
SIITTRVQMG HLALKPFHSD ISTMLRRLDL ALKKAKTHDV ALSEYLLGDD AAQLREVSII
NSLAKALRDG ELYMVYQPKQ SLPKGGCEQV EALMRWQHPL LGNISPAEFI PLAEYSGMID
IVSQWALDQV FVQQAVWRKS DIKLQVAVNL STQDLRNASL IAGIEARLEQ YQLKASAISI
EITESKLMQD LEGAVETIKR LRCLGVDVAI DDFGTGHSSL AYLKYLPVDE VKIDKAFLED
LEVDARARHI MDTSIRLAKG LGFKVTVEGV ETEDVLQLLL DMGVDKIQGD IFSKPLTAKE
LGARWLKISQ AG
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