| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_3006 |
|---|
| Symbol | |
|---|
| ID | 5663396 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella pealeana ATCC 700345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009901 |
|---|
| Strand | - |
|---|
| Start bp | 3683235 |
|---|
| End bp | 3686429 |
|---|
| Gene Length | 3195 bp |
|---|
| Protein Length | 1064 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 641237645 |
|---|
| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
|---|
| Protein accession | YP_001502858 |
|---|
| Protein GI | 157962824 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATCAAG GCTTAATTCT CTCTCTTATA CAAAATGCCG CATTATTGCT CGCGATAGTT
CTCGTGTACG ACGCCTTTCC ACGCAACCAT AAGCGCTCTC TGGATCTACT ATGGCGTGTG
GGCATCGGTG TTCTCGTTGC GATTATTACT ATCTCCGTCA TGTTAATGCC TTGGCAACAC
AGTAACGGTG TATTTATCGA TTCAAGAACC GTTATTTTAA GTGTCTGCGG TCTTTTCTTC
GGAGGCGTGC CCACTTTAGT AGCCGTAATC TTAAGTTGTT TATATCGGCT AAGTGAAGGG
GGCATAGCGG TATGGTCTGG TATTGGCACT ATAGTGTCAT CAGGCCTAAT GGGATATCTC
TGGGGGAAGT ACCGCAAAGG TGATATCGGT GATATCCGTA TCAGTGAGTT ATTTGCCTTT
GGGCTGATGA CCCATAGCGT AGCCTTACTC TGGGGCTTAA CCATGCCCAC CGAAATCGCC
ATAAATCTAC TGAAACAGAT CACCGTTCCC CTTCTGGCCA TCTTTCCCAT CACCACCGTT
TTGCTCGGCA TATTGCTATC TAGGCGTATA GAGATAGAGC GGGATCAAAA AATAAAGTTG
CAGGACCACT TGCTGTTTAA GTCGCATTTC CACAGCGGAA ATATGGGAAT AGCAATTACC
GATATAGCCC ATGAATGGAT TAAGGTTAAC CCCAGTTTGT GCCAGATGCT CAAGTATACC
GAGCAAGAGT TACTCAGTTT GTCTTGGCTT GACCTTATGT CTGCTGATGA TTTTCAACTC
TATAAGCATC ACCTTTTAAG GATGCTCGAT GGAAGGATTA ACGAGTTTGA GCTTGATCTC
TGTCTTATTG CTAAAGATGA GACGATTGTC TATACCCATA TGACAGTGGC TTGTCAAAGA
GTGCAATCCA GAGTCGAATT GATTATTACT GGTTTTTTAA ACCGCACCTC ACAGAAGGAA
GCCGAAAAAG AGAAGCTTGC CAGTCAAGAG CAATTGGGCT TAGTGCTTGG CAGCAGTGAG
TTAGGCTTTT GGGATTGGGA TATTCGTAAC GACATTATCG AGCGAAATGA GCACTGTGCA
GCCTTACTTG GCTGTGATAT CGACACTCTA AATCGCCAGC AGAAACTGTG GGGCGACTCG
ATTCATCCTG AAGACCGAGT CAGAGTACTG AGGTCGATAA AGGCGCATCT AAGTGGTGAA
ACGGAACAGC ATAAAGTCGA ATACCGTATT CGTACTTTAG CGAGTGAAAC ATTATGGATC
TTAGACTCTG GAAAAGTAAT GAGCCGCGAT GAAAGTGGTT GTCCCTTAAG AATGTGCGGT
ATACACACAG ATATCACAGA TAGAAAGCGG GTTGAAGAAT CATTAAAGCT TGCAGCATCT
GTTTATAACA ACAGCCGTGA AGCTATGAGT GTGCAGGATG ATAAAGGCTT GATTATTAAT
ATTAATGCCG CATTTACTGA TATTACCGGT TACACAGAGT CGGAAGTTAA AAATCAAAAC
ATCAAGATAT TACAGTGCAG CCGTAATAAC CGTAGTGCCT ATGAGCAGAT GCACATGGCG
GTTGAAGAGG AGGGGCGCTG GCAGGGAGAG GTTTGGCTAA GGCGTAAAAA TGGTGAAGAG
TTTGTGGTAT GGCTAACCTT GAATGCCTTA TTTGATGCCG AAGCGCAGAC TCAGCGCCAC
GTAGCTCTTT TCTCAGACAT CACAGAAAAG AAGCAAGCCG AAAAGATTAT CTGGAAGCAG
GCTAATTATG ACACATTAAC AGGCCTACCA AATCGGCGTA TGTTGCTCGA CTATCTTAAT
GCGGAGATCT TAAAATCAGA TAGCCGCGAG CAGCACTTTG CATTGATGTT TTTAGACCTA
GATTACTTTA AAGAAGTTAA TGACACACTC GGGCACGATA TGGGAGACAT GTTGCTATCG
GAAGCAGCTA AGCGTCTAAA GGCCTGTATT CGAGATTCTG ACGTGGTGGC AAGGTTAGGG
GGGGATGAGT TTACGATTGT TTTATCTGGC GTTACTGATA TTAAAGGTGT CGATAAAGTG
GCGAAACACA TTTTAACTCG CATTGCTGAG CCCTATAACT TAGGGGAAGA GACCGCCTAT
ATTAGTGCCA GCATTGGTAT TACTCTCTAC CCAGATGATG CCTCAACCAT TGAGGGATTA
TTAAAGCACG CTGACCAAGC CATGTATGCC GCAAAAGACG AAGGGCGAAA CCGCTTTCAT
TACTTTACTC CATCGATGCA GCGATACGCC AAATATAGAA TGCGTCTGAT TCAAGACCTT
CGTTCAGCCA TTGCCGACCA TGAATTTGAG CTCTATTACC AACCCATCGT CAGTTTGCAG
GGGGGGCTGG GGCTTAAGGC CGAGGCCTTG ATCCGTTGGC GTCACCCTAA ACGCGGTCTC
GTGTCGCCAA TAGAGTTTAT TGCGGTCGCC GAAGAGACAG GTCTTATTAT TGAAATTGGC
AATTGGGTTT TCCAGCAAGC CGCCCGTCAG AGTGCTTTGT GGCGCGATCG TTTTGGCATT
GAGGTGCAGA TCAGTATTAA CAAATCCCCG GTTCAGTTTA GGGATGAAGG TGAGAGCATA
AATTCTTGGG TGAATCTGTT AAAGACGCTG AACTTAACTA ATAATAATAT CTGTATCGAG
ATCACAGAGG GCTTGTTACT CGATGGCAAT AGTGCGATCT CATCTAAACT GACCCAATAT
CGTGATTCAG GGATCCAGAT CTCCCTCGAT GACTTTGGAA CAGGCTATTC TTCACTGGCA
TATCTTAAGA AGTTTGATAT AGATTTTTTA AAAATAGATC AGTCTTTCAC GCGAAATTTA
GACAGTAACA GTGATGATTT CACCTTATGT GAAGCGATTA TTGTGATGGC GCATAAGCTG
GGGATGAAAG TTATTGCCGA AGGTGTCGAG ACCGATTATC AACGCAAAAT CTTAGCCAAT
GCAGGTTGTG ACTTTGGTCA AGGCTATCTA TTCTCAAGAC CTGTACCCGT TGAAAAGTTT
GAGCAGGCCT TTCTTGTACC TGTAAATACT CAGAACGAAA ACTGCCGCGC AGATGACAGC
GCTGTAGAAA ACGTTTCTGT AGAAAACATT TCTGTAGAAA AGAGTTCAGT AGACATCGAT
TCTGTAGATG ATAGCTCAGT AGAAAGCGTT TCTGTAGATG ATAGTTCAGT AGAAAAGAAT
TTCCGTAGAG TATAG
|
|---|
| Protein sequence | MDQGLILSLI QNAALLLAIV LVYDAFPRNH KRSLDLLWRV GIGVLVAIIT ISVMLMPWQH
SNGVFIDSRT VILSVCGLFF GGVPTLVAVI LSCLYRLSEG GIAVWSGIGT IVSSGLMGYL
WGKYRKGDIG DIRISELFAF GLMTHSVALL WGLTMPTEIA INLLKQITVP LLAIFPITTV
LLGILLSRRI EIERDQKIKL QDHLLFKSHF HSGNMGIAIT DIAHEWIKVN PSLCQMLKYT
EQELLSLSWL DLMSADDFQL YKHHLLRMLD GRINEFELDL CLIAKDETIV YTHMTVACQR
VQSRVELIIT GFLNRTSQKE AEKEKLASQE QLGLVLGSSE LGFWDWDIRN DIIERNEHCA
ALLGCDIDTL NRQQKLWGDS IHPEDRVRVL RSIKAHLSGE TEQHKVEYRI RTLASETLWI
LDSGKVMSRD ESGCPLRMCG IHTDITDRKR VEESLKLAAS VYNNSREAMS VQDDKGLIIN
INAAFTDITG YTESEVKNQN IKILQCSRNN RSAYEQMHMA VEEEGRWQGE VWLRRKNGEE
FVVWLTLNAL FDAEAQTQRH VALFSDITEK KQAEKIIWKQ ANYDTLTGLP NRRMLLDYLN
AEILKSDSRE QHFALMFLDL DYFKEVNDTL GHDMGDMLLS EAAKRLKACI RDSDVVARLG
GDEFTIVLSG VTDIKGVDKV AKHILTRIAE PYNLGEETAY ISASIGITLY PDDASTIEGL
LKHADQAMYA AKDEGRNRFH YFTPSMQRYA KYRMRLIQDL RSAIADHEFE LYYQPIVSLQ
GGLGLKAEAL IRWRHPKRGL VSPIEFIAVA EETGLIIEIG NWVFQQAARQ SALWRDRFGI
EVQISINKSP VQFRDEGESI NSWVNLLKTL NLTNNNICIE ITEGLLLDGN SAISSKLTQY
RDSGIQISLD DFGTGYSSLA YLKKFDIDFL KIDQSFTRNL DSNSDDFTLC EAIIVMAHKL
GMKVIAEGVE TDYQRKILAN AGCDFGQGYL FSRPVPVEKF EQAFLVPVNT QNENCRADDS
AVENVSVENI SVEKSSVDID SVDDSSVESV SVDDSSVEKN FRRV
|
|---|
| |