| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_2991 |
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| Symbol | |
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| ID | 5663381 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | + |
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| Start bp | 3662701 |
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| End bp | 3664566 |
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| Gene Length | 1866 bp |
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| Protein Length | 621 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 641237630 |
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| Product | 1-deoxy-D-xylulose-5-phosphate synthase |
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| Protein accession | YP_001502843 |
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| Protein GI | 157962809 |
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| COG category | [H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism |
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| COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
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| TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00146592 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTTTTG ATATTTCTCA ATTTCCTGTG CTTGCACAGG CTAATACCCC AGATGAGCTA
AGACAGCTCC CTCAAGCCGT GTTGCCACAA TTGGCAGATG AGCTTAGAGG TTTCCTATTG
AAGTCTGTTG GTAAATCAAG CGGTCACTTC GCATCGGGTC TTGGCACGGT GGAGCTCACC
GTAGCACTTC ATTATGTGTA CAACACACCA TTCGACAGAC TGGTCTGGGA CGTGGGTCAC
CAAGCCTACC CTCACAAGAT CTTAACTGGA CGCCGTGAAA GAATGCACAC GATTCGCCAA
AAAGGCGGCG TGCACCCTTT CCCATGGCGT GAAGAAAGTG AATACGACAC CTTTAGTGTT
GGTCACTCAG GTACCTCTAT CAGTGCCGCT CTTGCTATGG CTGTCGCTGC AGAAAAAGAG
CAAGCCGGTC GTAAAGTAGT TGCCGTAATT GGTGACGGCG CAATGACAGG TGGCATGGTG
TTTGAAGCCA TGAACCACGC AGGTGACTTG CATAACGACA TGCTAGTCGT GCTCAACGAT
AACGAGATGT CTATCTCAGA GAACGTTGGC GCACTCAATA ACCATCTTGC ACAACTGATG
TCAGGCCGCT TCTATACCAC GATTCGTGAA AGCAGCAAGA AAGTGCTTAA AGGCATGCCT
GTTATCAAAG AGATGGCTAA GCGCACCGAA GAGCACCTGA AAGGCATGGT GGTTCCTGGC
ACTTTATTTG AAGAACTTGG CTTTAACTAT ATTGGCCCTA TCGATGGTCA TGACGTGGAC
GCTCTTGTTG AAACCATGCG TAATATGCGC AACTTAAGTG GTCCACAAGT GCTGCATATC
ATGACGAAAA AAGGTCGTGG TTATGAGCCT GCAGAGAAAG ATCCTATCGG CTGGCACGCG
GTACCTAAGT TTGATCCGTC AACCTTTGAA AAGCCTGCGG CTAAACCATC AGACCCAACC
TTCTCTGAAG TGTTTGGTAA ATGGTTATGT GATATTGCCG AAAAAGATGA AAAGGTATTA
GGTATTACGC CGGCCATGCG CGAAGGCTCA GGTATGGTTG AGTTTTCTCA GCGCTTTCCT
AAGCAATATT TCGATGCAGC GATTGCCGAG CAACACGCGG TCACCTTAGG TGCGGGTTTT
GCCTGCGAAG GCTATAAGCC TGTTGTGGCA ATCTACTCTA CCTTCCTACA ACGCGGCTAT
GATCAAATGA TCCACGACGT GGCTCTACAG CGACTGCCTG TACTGTTTGC TATCGACCGC
GGTGGTATTG TGGGTGCCGA TGGCCCAACT CACCAGGGTG CATTCGATTT AAGCTTTATG
CGCATAGTAC CCAATATGGT GATCATGGCG CCATCTGATG AAAACGAATG TCGCCAGATG
CTATATACAG GTTATTGCTA CAATGATGGC CCAACTGCCG TACGTTACCC TCGCGGGAGT
GCAACTGGTG CTAAACAAGT CGAAACCATG ACGGCTATGC CAATTGGTAA AGGCTTGATT
AAGCGTCAAG GTAAGAAGAT TGCCATTCTT AACTTTGGTA CCTTGCTAGC AAGCAGTTTA
ACTGCTGCTG AAGCATTGGA CGCCACCGTT GCCGATATGC GCTTTGTGAA GCCACTGGAT
GTTGAGCTGG TTAAACAGCT GGCAGAGAGT CACGATATGT TAGTCACTGT GGAAGAGAAC
GCCATCATGG GCGGCGCAGG TTCAGGCATA CTTGAACTAT TGCAAACTCT TAAGTTACCA
AAGCCAGTAT TACTAATTGG TTTACCTGAT GAGTTTATTA AGCATGGTGC CCCAGATGAG
ATCATCAGTG AACTAGGCTT AGATGCCACA GGTATTCAAA AGCAGATCGA AGACTTTATC
GCCTAA
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| Protein sequence | MSFDISQFPV LAQANTPDEL RQLPQAVLPQ LADELRGFLL KSVGKSSGHF ASGLGTVELT
VALHYVYNTP FDRLVWDVGH QAYPHKILTG RRERMHTIRQ KGGVHPFPWR EESEYDTFSV
GHSGTSISAA LAMAVAAEKE QAGRKVVAVI GDGAMTGGMV FEAMNHAGDL HNDMLVVLND
NEMSISENVG ALNNHLAQLM SGRFYTTIRE SSKKVLKGMP VIKEMAKRTE EHLKGMVVPG
TLFEELGFNY IGPIDGHDVD ALVETMRNMR NLSGPQVLHI MTKKGRGYEP AEKDPIGWHA
VPKFDPSTFE KPAAKPSDPT FSEVFGKWLC DIAEKDEKVL GITPAMREGS GMVEFSQRFP
KQYFDAAIAE QHAVTLGAGF ACEGYKPVVA IYSTFLQRGY DQMIHDVALQ RLPVLFAIDR
GGIVGADGPT HQGAFDLSFM RIVPNMVIMA PSDENECRQM LYTGYCYNDG PTAVRYPRGS
ATGAKQVETM TAMPIGKGLI KRQGKKIAIL NFGTLLASSL TAAEALDATV ADMRFVKPLD
VELVKQLAES HDMLVTVEEN AIMGGAGSGI LELLQTLKLP KPVLLIGLPD EFIKHGAPDE
IISELGLDAT GIQKQIEDFI A
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