| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_2984 |
|---|
| Symbol | |
|---|
| ID | 5663374 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella pealeana ATCC 700345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009901 |
|---|
| Strand | - |
|---|
| Start bp | 3656252 |
|---|
| End bp | 3657163 |
|---|
| Gene Length | 912 bp |
|---|
| Protein Length | 303 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 641237623 |
|---|
| Product | DNA-binding transcriptional activator GcvA |
|---|
| Protein accession | YP_001502836 |
|---|
| Protein GI | 157962802 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.0851103 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCAAGAC GATTACCTCC CCTAAATGCA GTAAAGGCAT TTGAGGCTGC AGCTAGGCAT
TTAAGCTTCA CTCGAGCAGC TGAAGAATTG TTTGTTACTC AGGCTGCTGT GAGTCATCAA
ATTAAAGCAT TAGAAGAGTA CCTTGGGTTA AAATTATTTC GTCGTAAGAA CCGTTCATTA
CTGTTAACCG AGGAAGGGCA AAGCTACTTT CTCGATATAA AAGATATCTT CACTCAGCTT
GCCGATGCGA CAGACAGATT ATTAGCGAGA AGTGCCATAG GCTCGCTTAC AGTAGCGACA
TCACCTAGCT TTGCGATTCA GTGGCTGGTA CCTAGACTAG CCAAGTTTAG CGAGAAAAAC
CCAGAGATTG ACGTGCGAAT TAAGGCCGTG GACGACGAGG ATGGTTCACT CACCGACGAT
GTTGACGTGG CAATTTATTA TGGCATGGGC AACTGGCAAG GAATGCGTGC CGATAAGCTC
AGAAACGAAG TACTTATCCC AGTTTGTTCA CCTCTATTAC TCAATGGTCC TAAGCCATTA
GAAAAGCCCT GCGATCTTAG AAATCATACC TTGCTACATG ACTCTAGCCG CCAAGATTGG
CTGGCTTGGT TTAGGCAATG TGGAATTACT GATATTAATG TGAACCAAGG TCCGATATTT
AGTCACTCCT CTCTTGTGTT GCAAGCTGCC GCACATGGTC AAGGTGTGGC GCTAGGCTAC
AGCGTACTAG CAAGACCCGA TATCAAAGCG GGTCGTCTAG TTTGTCCCTT CCCTGAAGTT
CTAGTCAGTA AAAGTGCATA TTATTTAGTG TGTCAACAAA ACCATGCCGA GATCGGTAAA
GTGGTAGCCT TTAGAGAATG GATGCTGGAT ATGTTCGAAG AGGAGACCCG TAGTGAGTTG
CTTACTGGAT AA
|
|---|
| Protein sequence | MARRLPPLNA VKAFEAAARH LSFTRAAEEL FVTQAAVSHQ IKALEEYLGL KLFRRKNRSL
LLTEEGQSYF LDIKDIFTQL ADATDRLLAR SAIGSLTVAT SPSFAIQWLV PRLAKFSEKN
PEIDVRIKAV DDEDGSLTDD VDVAIYYGMG NWQGMRADKL RNEVLIPVCS PLLLNGPKPL
EKPCDLRNHT LLHDSSRQDW LAWFRQCGIT DINVNQGPIF SHSSLVLQAA AHGQGVALGY
SVLARPDIKA GRLVCPFPEV LVSKSAYYLV CQQNHAEIGK VVAFREWMLD MFEEETRSEL
LTG
|
|---|
| |