| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_2972 |
|---|
| Symbol | |
|---|
| ID | 5663362 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella pealeana ATCC 700345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009901 |
|---|
| Strand | - |
|---|
| Start bp | 3639647 |
|---|
| End bp | 3641452 |
|---|
| Gene Length | 1806 bp |
|---|
| Protein Length | 601 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 641237611 |
|---|
| Product | peptidase M61 domain-containing protein |
|---|
| Protein accession | YP_001502824 |
|---|
| Protein GI | 157962790 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3975] Predicted protease with the C-terminal PDZ domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0085127 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAAACCTG TAGTTCCCTT TATCTTAACT TTTGGGGCGT TAGCCAGTAC TAATGCCATT
GCCAATGTAA ACTACCAGAT TGACTTAACT AGCCCAGAAC ATCATTTGGC AAAGGTAGAA
GTCGTCTTTC CAGAAACCCA GTCAAATTCA TTAGTGGTTA ATTTGCCTGT ATGGCGCACG
GGTAAGTATC AAGTCTTGCC ATTGGCGGAT GCTGTTAGAA CCTTTACGGC TACCGATGAT
AGCGGTTCAG TATTACCTTG GACAAGAACC GCGAGTGGTG AGTGGACAGT TGCCTTAACT
GAACCAACGA GCGTAACCGT CAGTTATCAA CTCTATGCCA ACAAATTAGG CCAAAGGGTC
AATCATATCG ATGCATCCCA TGCTTTTTTA GATGCGAGTG GCACTTTTGT TTATAGCCCA
GAGTTTAGAA ATGAGCCTTT AACTGTTTCC TTAGATGTAC CTAGTGACTG GAATAGTTAT
TCCGGTATGG ACAGTGGCAA GAAGGCACAT TCTTTTATAG CCGATAATTA CGATATCTTA
GTCGACTCTC CAATCGAAAC CGGGCTCAGC GAGCATCGAA CTTTTAGAGC CGACGGCAGA
GCGTATGAAT TAGTGGTTTG GGGGGAGGGC AACTACGACA TCGACCAAAT AGTTACCGAC
TTGAGCAAAC TCAGTGGTCA GGCCGAGGTC ATTTGGGATG ATTATCCGTT TGAGCGTTAT
GTTTACATGG TCCATGCCAC GAGCGGTGCC CGCGGCGCAA CAGAGCATCT GAACTCAACC
ATTATTCAGC GCCCACGTTT TAGTTATCGA GATCGTAAAG ATTATTTAGG ATTTATCAAA
ACCGCTTCTC ATGAGTTTAT TCATACTTGG AACGTCAAGG CTTATCGCCC AGATGGATTA
GTCCCTTACA ACTATCAAGA TGAAGAGATC ACCGAGCTAC TTTGGATTGC TGAAGGCTCA
ACCAGTTACT TCCAAAGCCA GTTATTGCTA CGTGCTGGAG TGATGACCCC GAAGGAGTTT
TTAGAAGACT TGGCAAAACG TGTAGCGCAA AGCGAGAAAA CACCGGGACG TGAAGTGCAA
TCAATTGCAG AGGCCAGTGC TAATCAGTGG GCAAGTAGCG GTGGTGATTA CGCGGTTAAC
CACAGCACTA ACATCTACTC AGAGGGGTAC TTAACCTCTT TGGCTCTCGA TTTCTCTTTG
CTTGAACAAA CCAAACTTAA GCGCTCATAT CGCGACGTAC ACCGTAAGCT CTACAATGAA
TACAAGCTCC CCGTGGGCTA TACCATTGCT GATGTGAAAG GGATCTTAAA CCAAGTATCG
GGGACAAGTT ATGAAAACTG GTGGCAGGAG TATGTTAACT CGCCAGTCAG TTTAGACTTT
GATGCCTTGC TCGGTCAGGC CGGTCTAAAA ACCAGTTACG GTAAAGACAC TAAAGTCGAG
CCTTTTACCG GAGTGACCTT GAAGTCTGGT TCATTGGTGT TGTCTCAGGT GCTGCGTAAT
GGTCCTGCTT GGAATGCGGG CATCGTACTT GGCGACGAGG TAGTGGCGAT AAACGGCCTT
AAAGTGACAG CGGCGGGTTT CGAGTCACGC ATTAAAGACT TTAACGCTAC AGACACGATT
AAAGTAACCT TATTTAGCAA TGACAGGTTG AAAGAGGTGG AGCTTAAGCT CGGCGAGAAG
CAAAGTGGCA AGTTGGCAAT CACCAGTGTC GACAAGCCAA GTCGTTCACA AAAGGCTTTC
TTTGAGGCTT GGCTTGGTGT CGATTGGCCG TTTGATAAAC AAGGTCAGCT AAAAGCGGTC
AAATAA
|
|---|
| Protein sequence | MKPVVPFILT FGALASTNAI ANVNYQIDLT SPEHHLAKVE VVFPETQSNS LVVNLPVWRT
GKYQVLPLAD AVRTFTATDD SGSVLPWTRT ASGEWTVALT EPTSVTVSYQ LYANKLGQRV
NHIDASHAFL DASGTFVYSP EFRNEPLTVS LDVPSDWNSY SGMDSGKKAH SFIADNYDIL
VDSPIETGLS EHRTFRADGR AYELVVWGEG NYDIDQIVTD LSKLSGQAEV IWDDYPFERY
VYMVHATSGA RGATEHLNST IIQRPRFSYR DRKDYLGFIK TASHEFIHTW NVKAYRPDGL
VPYNYQDEEI TELLWIAEGS TSYFQSQLLL RAGVMTPKEF LEDLAKRVAQ SEKTPGREVQ
SIAEASANQW ASSGGDYAVN HSTNIYSEGY LTSLALDFSL LEQTKLKRSY RDVHRKLYNE
YKLPVGYTIA DVKGILNQVS GTSYENWWQE YVNSPVSLDF DALLGQAGLK TSYGKDTKVE
PFTGVTLKSG SLVLSQVLRN GPAWNAGIVL GDEVVAINGL KVTAAGFESR IKDFNATDTI
KVTLFSNDRL KEVELKLGEK QSGKLAITSV DKPSRSQKAF FEAWLGVDWP FDKQGQLKAV
K
|
|---|
| |