| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_2952 |
|---|
| Symbol | |
|---|
| ID | 5663342 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella pealeana ATCC 700345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009901 |
|---|
| Strand | - |
|---|
| Start bp | 3613640 |
|---|
| End bp | 3615379 |
|---|
| Gene Length | 1740 bp |
|---|
| Protein Length | 579 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 641237591 |
|---|
| Product | YidE/YbjL duplication |
|---|
| Protein accession | YP_001502804 |
|---|
| Protein GI | 157962770 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2985] Predicted permease |
|---|
| TIGRFAM ID | [TIGR01625] AspT/YidE/YbjL antiporter duplication domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATATTT CTGAGTTATT CAGTTTTGTG TTTAGTTATA TCGCTCATAA CCCCTTCGTA
TTTTTGTTTT TAGCCATCGC TATCGGTTAC CCACTGGGAA AAATTTCTAT CAAGGGAATA
GCGCTAGGCT CTACAGCCGG AACCTTAGTC GTTGGTGTTG CTATCGCCCT GACGGCTTTT
TCTGTTTATG GCTTGAAAAT CGAAGAACCC GGATTAGTGT CTGACATTTT CTTGATGATG
TTTATGTATG CGATAGGCAT GAAGGTAGGG CCACAGTTTT TCTCCGGCCT TGCCAGAGGC
GGGCTCGACT TTGTTGTGAT AGGCCTGATC GTGGTCTTTA GTAACTTTCT TATTGTATTT
TTCGGAGCAA AATTACTCGG TTTAGCACCG GGTTATGCTG CAGGGATCAT CTCGGGCAGT
TACACGGTAA CTGCCGTGAT GGGGGTTGCT CAATCTGCTA TCTCATCTGG TGCGTTTAAG
GCGCCAGCAG GCATGACCTT AGATCAAGTC AGCGCTAATA TTGCCGCGGG TTATGCTATT
AGCTATGTCT TATCCAGTGT TTTCATTATT TTACTTATTA AGTATTTACC AGCGATGTTT
GGTATCGATC CCGTTAAGGC GGGTAAAGAT GCTGAGGCAG AATTTGGCGT AGGTGATGAT
GTTGAGGCGC TGCCAAGTAC TAATGGATTC TCAAACCTTG GTGTATTGCC GTTAGACATT
CGCGCCTATC GGGTAGAGCA CCAAGAGTTA GTTGGTCAAA GCGTTGAGTC ACTGTTTAAG
AAGTTTCCCC ATGCCGCGAT TTTAAAAGTG GTTCGAGGCG AGCAAGTATT TGATGCTGCT
GATAATCCAA AACTCGCCTT AGGTGATGTT ATCGGTATTC GAGGCGACTA TCATGTTTTG
ATAGACGATG GTGCTTTTGT TGGTGTAGAG GTCGATGAGC CTAGAGCTAG AAACGTCGAC
ATTGAAGTGG CTGATATTCA TCTAGGTAAG TCAGGATATA CTGGTAAGAC GATTGCTCAA
ATTAGCGATG AGGTGGGCTT TGGCGTTTAC ATTAAAGCGC TGTTTAGACA AGGGCACCAG
CTACCCGTTA CCCAGCAAGC AGTTGTCGAA GTTGGCGATG TATTGCGAGT TGCCGGATCG
GATTGGTGCG TTCAGCAAGT CGCTAAAAAG TTAAATAGTA CACCGATAGT AGAAAGTACC
TTAACGGAAA CTTTTTACCT AGCCATATCC TTGCTGATTG GTTATGTATG CGGACATTTT
AGCGTGACCT TAGGTGGGAT CCCTTTTGCA TTAGGCACCT CTGCGGGCTG TATGTTAACC
GGGATTATAT TTTCCTTCTT AAGGACTCGT AACCCGGCCT TTGGTGGTCC TATGAGTGAA
GGCGCAAGAA GCTTCTTACA AGATATCGGC TTAAGCTTAT TTGTCGCGGT ACTTGCTGCA
ACGGTTGGCC CTAAGATTCT GGCTTCATTT CAAGGTATTG TGGTGATTAA AATCGCGGCT
CTTGGTTTAA CTGCTGCACT TGTTCCTCCT TTGTTAGCTT GGCTATATGG CTTGTATTTC
CGCAAGATGA ACCCTGCGAT ATTGGCTGGC GCCTGCGCCG GTGGACGTAA TAGCACGCCT
GCAATGAAAG GGGCTCAAGA TGTATGTCAA AGTGATATGC CAGCGGTTGG CTACCCTGTA
CCTTATGCAC TCACCTCTAT GATAGTGCTG GTATTAGGCT ATTTAACTAT GGTGCTTTAG
|
|---|
| Protein sequence | MNISELFSFV FSYIAHNPFV FLFLAIAIGY PLGKISIKGI ALGSTAGTLV VGVAIALTAF
SVYGLKIEEP GLVSDIFLMM FMYAIGMKVG PQFFSGLARG GLDFVVIGLI VVFSNFLIVF
FGAKLLGLAP GYAAGIISGS YTVTAVMGVA QSAISSGAFK APAGMTLDQV SANIAAGYAI
SYVLSSVFII LLIKYLPAMF GIDPVKAGKD AEAEFGVGDD VEALPSTNGF SNLGVLPLDI
RAYRVEHQEL VGQSVESLFK KFPHAAILKV VRGEQVFDAA DNPKLALGDV IGIRGDYHVL
IDDGAFVGVE VDEPRARNVD IEVADIHLGK SGYTGKTIAQ ISDEVGFGVY IKALFRQGHQ
LPVTQQAVVE VGDVLRVAGS DWCVQQVAKK LNSTPIVEST LTETFYLAIS LLIGYVCGHF
SVTLGGIPFA LGTSAGCMLT GIIFSFLRTR NPAFGGPMSE GARSFLQDIG LSLFVAVLAA
TVGPKILASF QGIVVIKIAA LGLTAALVPP LLAWLYGLYF RKMNPAILAG ACAGGRNSTP
AMKGAQDVCQ SDMPAVGYPV PYALTSMIVL VLGYLTMVL
|
|---|
| |