| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_2878 |
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| Symbol | |
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| ID | 5663269 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | - |
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| Start bp | 3516396 |
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| End bp | 3517766 |
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| Gene Length | 1371 bp |
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| Protein Length | 456 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 641237518 |
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| Product | putative membrane-associated zinc metalloprotease |
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| Protein accession | YP_001502731 |
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| Protein GI | 157962697 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0750] Predicted membrane-associated Zn-dependent proteases 1 |
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| TIGRFAM ID | [TIGR00054] RIP metalloprotease RseP |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0000126252 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGATCGATT TTTTATGGAA CTTAGGTTCT TTTATTGTTG CTTTAGGGAT TTTAATTGCT
GCCCATGAAT ATGGGCACTT TTGGGTAGCA CGTCGCTGTG GTGTTAAAGT TGAACGCTTC
TCCATCGGCT TTGGTAAAGC TATTTGGCGT AAAACAGGCC GAGACGGTAC AGAATACGTT
GTTGCTGCTA TCCCACTTGG TGGCTACGTT AAGATGCTCG ATGAGCGTGT CGACGATGTC
CCTGAAGAAC TAAAAGATCA AGCTTTTAAC CGTAAATCTG TCTGGCAGCG AATCGCAATC
GTTAGCGCTG GCCCCATCGC TAACTTCCTT TTCGCCATTA TTGCTCTCTA CGCCATGTAT
CTCATTGGTG TGCCCGCTAT TAAACCCGTT ATTGACTCGA CTGTTGCAGG TACACCTGCG
GCACAAATCG TGGTGAAAGA GCCGATGCAG GTGATGGCGG TTGGTACTCA AAAGGTCAGA
GACTGGGAAG AGGTTAACCT TGCTTTAGCT GGACATATTG GTGACAGTAG AGTCGATATC
ACTGTTGCGC CATTGTCTCG TTTAGAGGGC TCTTCAGGCG ATGAGAAAAC CTATTCTTTA
GATACTCAAG ACTGGAAGGT TAATCCAGAG AAAGAGTTAC CGATCACCGC AATTGGTCTT
GGCATGTATC GTCCGGCTAT TCTCCCTAAG CTTGGCTTGG TCAGTGAAGA TGGCGCAGCG
GGACTGGCAG GGATTAAGGT TGGAGATACC TTAGTTGCGA TTGACGGCGA AACTTATAAA
GATTGGCCTC GGTTCGTGGA GATAATCCAA GGCTCAGCGA ATAAGCCTGT CACCATTACG
GTACGAAGAG ACGGTGAGCA GTTTGCAATT AAGGTTACAC CTAAATCACG AGAAAATAGC
GAAGGTAAAC TCGAAGGCGT TATCGGTGTG GCACCGACTT CAGAACCTTG GCCTGAGAAT
ATGAAAGTGC AATTGGAGTA TGGGTTTTTA GATTCATTTC CGGTTGCGGT CGATAAAACA
TGGCAACTTG TCTCTGTCAG CATTAAGATG ATCGGCAAGT TACTTACTGG TGACGTTTCA
GTTAAAAACT TGAGCGGTCC TATTTCTATT GCACAAGGTG CTGGAAATAG CGCAAACGTC
GGACTGGTAT ACTTTTTAGG TTTCCTTGCA TTGATAAGCG TGAACTTAGG CATTATTAAC
TTATTGCCTT TGCCAGTGTT AGATGGGGGA CACCTTTTGT ATTACTTCGT AGAGGTAATT
ACAGGCAGGC CTGTACCGGA GAAGGTACAG GAAATTGGAT TCAGAATTGG GGCAGCTATG
CTGCTGATGT TGATGAGTGT AGCGCTTTTC AATGACTTTT CCCGACTCTG A
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| Protein sequence | MIDFLWNLGS FIVALGILIA AHEYGHFWVA RRCGVKVERF SIGFGKAIWR KTGRDGTEYV
VAAIPLGGYV KMLDERVDDV PEELKDQAFN RKSVWQRIAI VSAGPIANFL FAIIALYAMY
LIGVPAIKPV IDSTVAGTPA AQIVVKEPMQ VMAVGTQKVR DWEEVNLALA GHIGDSRVDI
TVAPLSRLEG SSGDEKTYSL DTQDWKVNPE KELPITAIGL GMYRPAILPK LGLVSEDGAA
GLAGIKVGDT LVAIDGETYK DWPRFVEIIQ GSANKPVTIT VRRDGEQFAI KVTPKSRENS
EGKLEGVIGV APTSEPWPEN MKVQLEYGFL DSFPVAVDKT WQLVSVSIKM IGKLLTGDVS
VKNLSGPISI AQGAGNSANV GLVYFLGFLA LISVNLGIIN LLPLPVLDGG HLLYYFVEVI
TGRPVPEKVQ EIGFRIGAAM LLMLMSVALF NDFSRL
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