| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_2877 |
|---|
| Symbol | |
|---|
| ID | 5663268 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella pealeana ATCC 700345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009901 |
|---|
| Strand | - |
|---|
| Start bp | 3513881 |
|---|
| End bp | 3516364 |
|---|
| Gene Length | 2484 bp |
|---|
| Protein Length | 827 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 641237517 |
|---|
| Product | surface antigen (D15) |
|---|
| Protein accession | YP_001502730 |
|---|
| Protein GI | 157962696 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG4775] Outer membrane protein/protective antigen OMA87 |
|---|
| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type
[TIGR03303] outer membrane protein assembly complex, YaeT protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.000000948 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGATTGA ATAAACTTTT TGCCTCGATG TTATTAGTCG GAGCGTCTTT TTCAGGGAAC
GGTTGGGCAG AGACATTCCA ACCTTTTGAA GTAGCTGATA TCCAAGTTGA AGGTTTACAG
CGAGTGGCAC TCGGTGCGGC TTTGCTTAAC CTACCTGTAA AGGTTGGGGA TACTGTTGAT
CAATTAAAAT TGCAGCAGGC GATTAAAAGC TTGTATGCGT CAACTAACTT CGAAAAAATA
GAAGTGCTGC GAGACGGAAA CGTGCTCGTA GTTAAAGTCA CCGAGCGTCC AACCATTAGC
TCAGTTACCT TCGAAGGTAA CAAAGATATT AAAGATGAGC AGTTGCAAGA GAGTCTTGAT
GGCTCCGGCG TAAAAGTCGG TGAGTCGCTA GACCGCACCA TGCTATCTGG TATCGAAAAA
GGCTTACAAG ATTTCTATTA CGGTGTAGGC AAGTACGGCG CTAAAGTAAA GGCAGAGATC
ATTAACTTAC CTCGTAACCG AGTTGAGCTT AAGTTTACCT TTACCGAAGG TCTAGCCGCT
GAAATTCGCC AGATCAATGT CGTGGGTAAC ACCGAGTTTA GTGATGCTGA GTTGATTGGC
ATGCTAGAAC TTAAAGATTA TGTCGCTTGG TGGGATCTGT TCGGTGAACG TCGCTATCAG
AAGCAGAAGC TGCAAGCTGA CCTTGAAACA ATTAAGACCT ACTATCAAAA CCGTGGTTAT
ATCCGTTTTG ACGTGACTTC TACTCAGGTT GCAATGACAC CTGATCGTAA AGGCCTCTAC
ATTACGATTA ACGTTGATGA AGGTGAACAG TATAAAGTCA AAGACGTTAA TCTAACTGGC
GACTTAATGG GTAAGGAAGA GGTGTTAGAA GCCATCTTGC CATTAAAGGC TGGTGACATG
TATAACGGCG GCGATGTGAC ATTTACCGAA GAGATGTACG GTAAATACCT AGGTCGATTC
GGTTACGCTT ATCCAGAAGT AAAAACCTAT CCAGAAATTG ATGATGAGAC TAAAGAAGTT
AATCTTAATA TCAACATCAA CCCTGGTAAG CGCGTTTATG TACGAAACAT CAGCTTCACT
GGTAACACAG TTACTAAAGA TGAAGTGATG CGTCGTCAGT TACGCCAGAT GGAAGGTGCA
TGGCTTAACT CTGCGCAAGT TGAATTGTCT AAATCAAACC TTAACCGTCT AGGTTACTTT
GAGACCGTTG ATACAGAAAC GGTACAAGTA CCAGGTACAG ACGATTTAGT TGATGTGGCA
TTTAACGTTA AAGAGCAGCC ATCTGGGTCA TTTAACGCAG GTGTAGGTTA CGGTACTGAA
TCAGGGCTAA GCCTACAGTT TGGCGTACAG CAGAGTAACT TCTTAGGTAC GGGTAACCAA
GCGGGTGTTA ACTTAAACAC TAACAAGTAC TCGAAGAACG TTAATATCAA CTACACCGAC
CCTTACTTTA CTAAAGATGG TGTCAGCTTA GGTGGTAGCA TCTACTGGAG TGAGTTTGAT
GCAGACGAGG CAAACCTTGA AGCCTATAAG AACAGTTCTT ATGGTGTGTC ATTAAACTCT
GGTTTCCCTA TTAACGAATA TAACCGTATT AACGGTGGTA TCGGTTATCG TCATAACGAA
ATTTCTGAAA TTTCAGCCTA TGAGCAGGCG ATTCGCTTCT ACGATATTTA TCGTGATAGT
GATGATCCCA ATGCAGGTTT AAGTTTTGAT AACTTCGAAC TGAGTCTAGG TTGGTCACGT
AGTAACTTGA ACCGAGGAAC CTTCCCATCA GATGGTTCAT CACAACGTTT GAACGGTAAG
ATGACTGTGC CAGGTTCGGA TCTGCAGTAT TTTAAAGCAG ACTTTGACAC TAGCTTCTAT
TTCCCGATCG ATCGTAAGCA CAGTTTTGTT ATGCTAGCGC GTGGTCGCTT AGGTTACGGT
AACGGTTACG GTCAGTTCAA TGATAACGAC CAAATTCTAC CGTTCTGGGA AAACTATTAC
TCAGGTGGTA GTAGTTCGCT TCGAGGCTTT AAATCTAACT CGGTCGGTCC GCGTTCGTTC
TACTTGTACC GAGGAAGTGA ACCATGTTCA CCGGATCCAT CGGGAGAAGG TTGTAGCTTG
CCAGGTGATC CTAACCAAAT TCAGGTTAGC TCTGGTCGTT CAATTGGTGG TAACGCCATT
GCAACAGCAA GCTTAGAGTT AATTGTGCCA ACACCATTCT TGGACGAGGC TTATACAAAT
TCTGTGCGGA CTAGTTTCTT CGTCGATGCT GGTAACGTAT GGGACACTGA GTTTGACTAC
GATTCATATC GTTATCTTCC GGTTGAAGAG TTTGATAGAC TGCAAGATTA TAGCGATCCG
AGCCGTATTC GTGCCTCTTG GGGCATGAGC GTGCAGTGGT TATCACCGAT GGGACCTATG
GTGTTTAGCT TGGCATGGCC AATCAAGGAA TACGAGGATG ATGAAACAGA GATCTTCTCG
TTTAATATTG GTAAAACTTT CTAA
|
|---|
| Protein sequence | MRLNKLFASM LLVGASFSGN GWAETFQPFE VADIQVEGLQ RVALGAALLN LPVKVGDTVD
QLKLQQAIKS LYASTNFEKI EVLRDGNVLV VKVTERPTIS SVTFEGNKDI KDEQLQESLD
GSGVKVGESL DRTMLSGIEK GLQDFYYGVG KYGAKVKAEI INLPRNRVEL KFTFTEGLAA
EIRQINVVGN TEFSDAELIG MLELKDYVAW WDLFGERRYQ KQKLQADLET IKTYYQNRGY
IRFDVTSTQV AMTPDRKGLY ITINVDEGEQ YKVKDVNLTG DLMGKEEVLE AILPLKAGDM
YNGGDVTFTE EMYGKYLGRF GYAYPEVKTY PEIDDETKEV NLNININPGK RVYVRNISFT
GNTVTKDEVM RRQLRQMEGA WLNSAQVELS KSNLNRLGYF ETVDTETVQV PGTDDLVDVA
FNVKEQPSGS FNAGVGYGTE SGLSLQFGVQ QSNFLGTGNQ AGVNLNTNKY SKNVNINYTD
PYFTKDGVSL GGSIYWSEFD ADEANLEAYK NSSYGVSLNS GFPINEYNRI NGGIGYRHNE
ISEISAYEQA IRFYDIYRDS DDPNAGLSFD NFELSLGWSR SNLNRGTFPS DGSSQRLNGK
MTVPGSDLQY FKADFDTSFY FPIDRKHSFV MLARGRLGYG NGYGQFNDND QILPFWENYY
SGGSSSLRGF KSNSVGPRSF YLYRGSEPCS PDPSGEGCSL PGDPNQIQVS SGRSIGGNAI
ATASLELIVP TPFLDEAYTN SVRTSFFVDA GNVWDTEFDY DSYRYLPVEE FDRLQDYSDP
SRIRASWGMS VQWLSPMGPM VFSLAWPIKE YEDDETEIFS FNIGKTF
|
|---|
| |