| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_2872 |
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| Symbol | lpxB |
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| ID | 5663263 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | - |
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| Start bp | 3509820 |
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| End bp | 3510971 |
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| Gene Length | 1152 bp |
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| Protein Length | 383 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 641237512 |
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| Product | lipid-A-disaccharide synthase |
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| Protein accession | YP_001502725 |
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| Protein GI | 157962691 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0763] Lipid A disaccharide synthetase |
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| TIGRFAM ID | [TIGR00215] lipid-A-disaccharide synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.0341971 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAGTTCAA ACAATCCTCG TGTATTTGCA ATGGTTGCCG GAGAGATCTC GGGTGACATT
TTAGGTGCAG GCTTAATTAA AGCACTGCAA AAGCAGTACC CAGATGCTAA ATTTGTTGGC
ATTGGTGGGC CCCGCATGGA AGCCCTTGGT TTTGAGTCAA TCTTCTCTTA TGAAGAGTTG
GCTGTTATGG GCATTGTGGA AGTTTTATCG CGTTTGCCAA GATTACTAAA AGTACGGGCA
ACGCTGATCG ATGAGTTGGT TAAGACACAA CCAGACTGTT TTATCGGTAT CGATGCGCCA
GACTTTAATA TTGGACTAGA GCTAAAGCTT AAGAACCGCG GTATTAAAAC GGTTCATTAC
GTTAGCCCAT CTGTGTGGGC ATGGCGACCA AAGCGTATTT TCAAAATTGC CAAGGCAACC
GACATGGTGT TGTCACTGCT GCCTTTTGAA AAAGCGTTTT ATGATGAATA TCAGGTGCCT
TGTACCTTTG TTGGTCATAC GTTAGCCGAT GATATTGAGC TTGAAAGTGA TAAAGCACAG
GCCCGTGAAT TACTTGGGCT TGATAAAGAA GCCGAGTACT TAGCAATATT ACCCGGATCT
CGCGGTGGCG AGCTCAAGAT GTTGGCCGAG CCGTTTGTCA AAGCGGCTAG CCTAATCAAG
CTGCGCTATC CTGATATTAA GTTCGTCACG CCATTAGTTA ACCAGAAGCG TCGCGATCAA
TTTGAGCAAG CGTTACGTGA GCATGCACCG GATCTAGAGA TCCATTTAAT TGAAGGTCAT
TCACGAGAGG TAATGGCTGC CGCTGACTGC ATACTGTTGG CCTCGGGGAC GGCAACATTA
GAGGCCATGC TTGTTAAGCG CCCTATGGTA GTGGCTTATC GAGTCAGCCC AATCACTTAT
CGCATTGCTA AAGGCATGAT GCTCACTAAG CGTTACTCCT TGCCAAATCT CCTTGCGGAT
GATGATGTGG TTGAGGAGCT TATTCAAGCT GACTGTACGC CAGAGAAAAT AGCGGCGGCT
GTTGCAACTC AGCTAGATAA TGACTTTACC CCAATGTATG ACCGCTTTAT GCAGATGCAT
AAGGGCCTTC GCTGTGATGC CAGCGCACGA GCCGCTGATG CAGTGATTAA GTTAGTAGAG
GATAATGTCT AA
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| Protein sequence | MSSNNPRVFA MVAGEISGDI LGAGLIKALQ KQYPDAKFVG IGGPRMEALG FESIFSYEEL
AVMGIVEVLS RLPRLLKVRA TLIDELVKTQ PDCFIGIDAP DFNIGLELKL KNRGIKTVHY
VSPSVWAWRP KRIFKIAKAT DMVLSLLPFE KAFYDEYQVP CTFVGHTLAD DIELESDKAQ
ARELLGLDKE AEYLAILPGS RGGELKMLAE PFVKAASLIK LRYPDIKFVT PLVNQKRRDQ
FEQALREHAP DLEIHLIEGH SREVMAAADC ILLASGTATL EAMLVKRPMV VAYRVSPITY
RIAKGMMLTK RYSLPNLLAD DDVVEELIQA DCTPEKIAAA VATQLDNDFT PMYDRFMQMH
KGLRCDASAR AADAVIKLVE DNV
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