| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_2870 |
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| Symbol | dnaE |
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| ID | 5663261 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | - |
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| Start bp | 3505566 |
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| End bp | 3509099 |
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| Gene Length | 3534 bp |
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| Protein Length | 1177 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 641237510 |
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| Product | DNA polymerase III subunit alpha |
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| Protein accession | YP_001502723 |
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| Protein GI | 157962689 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0587] DNA polymerase III, alpha subunit |
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| TIGRFAM ID | [TIGR00594] DNA-directed DNA polymerase III (polc) |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.91064 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTTTACT CTGTAAGATT GACTAGCAGT CTTCAACTAT CAAATAGAAA GATACTCCAT
ATTATGTCTG AACCACGTTT TGTTCACTTG CGCGTCCACA GCGACTTTTC AATGTCTGAT
GGACTGTCTA AAGTTAAGCC CATTATTGCT AAAGTGGCTG AACTTGGGAT GCCGGCAGTT
GCGTTAACTG ATCAAACAAA TATGTGTGGT TTGGTTAAGT TTTACGAGGC TTGTCATGGT
AACGGTGTTA AGCCAATCAT CGGCACCGAC TTTTGGGTCA AAGTCCCGGG GTTCGATGAA
TTTTGCTCTA TTACAGCTTT AGCGATGGAT AACACAGGTT ATTCAAATCT GACCTTGTTG
ATCAGTGACG CTTATCTTCG CGGTAACATC AACGATAAAG CGGTGATCGA TCACGAGTGG
CTAGCCAAGT ATAGCGAAGG TCTCATTTTG CTTTCGGGCG CTAAAGATGG CGATGTCGGC
CGTGCGTTAT TGAAAGAGAA CCAAAACCAG GTGGACTCAC TAATTGAGTT CTATAAGACT
CATTTCCCCG ATAGATATTA TTTAGAGTTG TTGCGTACCG GTCGTCCTGA CGAAGAGCGC
TATTTACACA TGGCTATCGC ACTTGCTGAG CAAAAAGACT TGCCAGTGGT CGCTACCAAT
CAGGTGGTAT TTAACAAGCC AGAGCAGTTT GACGCCCACG AAATTCGAGT GGCCATCTAC
GATGGTTTTA CCCTTGCCGA CCCCCGCAGA CCGAAGAAAT ACAGCGACCA GCAGTATTTT
AAAAGCAGCG ATGAGATGTG TGAGCTGTTT GAAGATATTC CTGAAGCGAT TCAAAATACG
GTCGAAATTG CTAAGCGTTG TAACGCTACA GTAAGACTGC ACGAGTACTT TCTGCCTAAC
TTCCCTACGG GCGACTTGAC CATTGAAGAC TTTTTAGTAG ATGTATCAGA AAAGGGCTTA
GAGGAGCGAC TAGAGTTTCT TTTTCCTGAC CCTGAAGTCA GAGCGGAGAA GCGCCCTGAA
TACGATGAGC GTCTCGATAT TGAGCTTAAA GTAATCAACC AGATGGGTTT CCCGGGTTAC
TTCCTTATCG TAATGGAGTT TATTCAATGG GGCAAAGATA ACGATATCCC AATTGGCCCA
GGTCGTGGTT CAGGCGCCGG TTCCTTGGTG GCTTACGCCC TTAAAATTAC CGATTTAGAC
CCACTCGAAT ACGATTTACT GTTCGAGCGA TTTCTAAACC CTGAACGTGT ATCAATGCCC
GACTTCGACG TCGATTTTTG TATGGATAGA CGTGACGAGG TAATCGATCA CGTAGCAGAC
CTTTATGGTC GTGACGCGGT ATCTCAGATC ATTACTTTTG GTACCATGGC TGCTAAAGCG
GTAATTCGAG ACGTAGGCCG TGTGCTTGGC CACCCCTATG GTTTCGTCGA TCGTATCTCT
AAAATGATCC CGGCTGAGCC TGGTATGACT TTGGCTAAAG CATTCGAGGT CGAGCCAGGC
TTACAAGAAT CTTATGATGG CGATGAAGAT GTTAAAGATC TCATCGACAT GTGTCGTATT
CTTGAAGGTG TAACCCGTAA CGCGGGTAAG CACGCCGGTG GTGTGGTCAT CGCGCCGACG
AAAATCACCG ACTTTTCTCC TATTTACTGC GATACAGAAG GCTTAAATCC GGTCACTCAG
TTCGACAAGA ACGATGTTGA AACAGCTGGT CTTGTTAAGT TCGACTTTTT GGGCCTAAGG
ACGCTGACCA TTATCGACTG GGCACTACAG ATGGTGAACA GCGTCAAAGA CAAGAATGGT
GAAGAGCGGG TTCGTATCGA GTCGATTTCA CTGACCGATC CTAAGTGTTT TAAGTTATTA
CAGCGCTATG AAACCACTGC GGTATTCCAG CTGGAATCCC GTGGTATGAA AGACTTGATT
AAGCGTCTTC AGCCAGATTG TTTCGAAGAT ATGATCGCAC TGGTTGCTCT GTTTAGACCG
GGCCCTCTGC AGTCTGGCAT GGTTGATAAC TTTATCGAGC GTAAGCACGG TCGAGAAGAG
GTGTCATATC CTGATGCTGA ATATCAGCAT GAGTCGCTAA AAGAGCTGTT ATCACCTACT
TACGGCATTA TTCTGTATCA AGAACAGGTA ATGCAGATTG CGCAGGTGCT CGCCGGTTAT
ACCTTGGGTG GCGCCGACAT GCTTCGTCGT GCCATGGGTA AGAAAAAACC TGAAGAGATG
GCCAAGCAGC GTGGTACGTT TGAAGCGGGT GCAATAGAAA ACGGTGTAGA TGGACCCCTG
TCGATGAAAA TCTTCGACTT GGTGGAAAAG TTCGCGGGTT ACGGTTTTAA CAAATCACAC
TCCGCCGCTT ATGCCTTGGT TTCTTATCAA ACTCTGTGGC TAAAGACGCA TTATCCGGCG
CAGTTTATGG CGGCGGTAAT GTCGGCGGAT ATGGATAACA CCGACAAGAT CGTGACCTTA
GTTGATGAGT GTGAGCGCAT GGGAATGCCA TTGCTACCAC CCGATGTAAA CAAGGGCTTG
TTTAGATTTA CCGTCGATGA TGACTTAAAC ATTGTTTATG GCATTGGCGC AGTTAAAGGC
GTGGGTGAAG GCCCAGTTGA TTCTATTCTT AAAGCACGTG AGAACGGACC TTTTATCGAC
TTGTTTGATT TCTGTGCTCG TATCGACTTA AAAAAACTTA ACCGCCGCGT GATTGAAAAG
CTAATCTGCG CTGGTGCACT CGATAACTTA GGTCCGCATC GTGCGGCAAT GATGGCAACC
TTGCCAGAGG CGATTCGCGC AGCGGATCAA CATGCCAAAG CCGAAGCTAT CGGCCAGCAC
GATATGTTTG GTTTGCTTAA TAGCGAGCCC GAAGACAGTA AGCAGCAATT TGTTGAGTGT
ACGCCTTGGC CTGACAAAGT CTGGTTAGAA GGTGAGCGAG ATACCTTAGG TCTGTATCTG
ACAGGTCACC CGATTAATCA GTATTTGAAA GAGCTAAAAC ACTATACATC AGGTCGCTTG
AAAGATGTCC ACCCAACGGA GCGCGGTAAG ACAATGAAGG CCGCCGGTCT TGTGGTTGCA
ACCCGTGTGA TGATGACCAA GCGTGGCTCT AAGATGGGAC TTGTTACGCT TGACGATAAG
AGCGCACGTT TAGAGGTGAT GCTATTTACC GAGGCTTTCG AGAAGTTTAA TCATCTGCTC
GAGAAAGACC GTATTTTGAT TATCGAAGGA GAGGTGAGTT TTGATGATTT CTCCGGTGGT
AACCGGATGA CGGCGCGTAA TATCATCGAT ATGGGCGAGG CAAGAAGTCA CTTTGCTAAT
GCGGTAGAGG TGGAGCTGCA ATCAGATAAG GTTAATGCCC TGTGGTTGAA TGAATTCAAG
GCTGCAGTAG AGCCATGGAA AGCAGGAGCT GTGCCTGTGT TGATAAACTA TGCTCAGCCA
CAATCACAAG CGCAATTTAC CCTAGGTGAT GAGTGGCGCG TAAACCCGAC CGATGAGCTT
ATGTTGGCGC TAGAGTCGTT AACAGGTTCA GGCAAAGTTA AGATCGTTTT TTAA
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| Protein sequence | MFYSVRLTSS LQLSNRKILH IMSEPRFVHL RVHSDFSMSD GLSKVKPIIA KVAELGMPAV
ALTDQTNMCG LVKFYEACHG NGVKPIIGTD FWVKVPGFDE FCSITALAMD NTGYSNLTLL
ISDAYLRGNI NDKAVIDHEW LAKYSEGLIL LSGAKDGDVG RALLKENQNQ VDSLIEFYKT
HFPDRYYLEL LRTGRPDEER YLHMAIALAE QKDLPVVATN QVVFNKPEQF DAHEIRVAIY
DGFTLADPRR PKKYSDQQYF KSSDEMCELF EDIPEAIQNT VEIAKRCNAT VRLHEYFLPN
FPTGDLTIED FLVDVSEKGL EERLEFLFPD PEVRAEKRPE YDERLDIELK VINQMGFPGY
FLIVMEFIQW GKDNDIPIGP GRGSGAGSLV AYALKITDLD PLEYDLLFER FLNPERVSMP
DFDVDFCMDR RDEVIDHVAD LYGRDAVSQI ITFGTMAAKA VIRDVGRVLG HPYGFVDRIS
KMIPAEPGMT LAKAFEVEPG LQESYDGDED VKDLIDMCRI LEGVTRNAGK HAGGVVIAPT
KITDFSPIYC DTEGLNPVTQ FDKNDVETAG LVKFDFLGLR TLTIIDWALQ MVNSVKDKNG
EERVRIESIS LTDPKCFKLL QRYETTAVFQ LESRGMKDLI KRLQPDCFED MIALVALFRP
GPLQSGMVDN FIERKHGREE VSYPDAEYQH ESLKELLSPT YGIILYQEQV MQIAQVLAGY
TLGGADMLRR AMGKKKPEEM AKQRGTFEAG AIENGVDGPL SMKIFDLVEK FAGYGFNKSH
SAAYALVSYQ TLWLKTHYPA QFMAAVMSAD MDNTDKIVTL VDECERMGMP LLPPDVNKGL
FRFTVDDDLN IVYGIGAVKG VGEGPVDSIL KARENGPFID LFDFCARIDL KKLNRRVIEK
LICAGALDNL GPHRAAMMAT LPEAIRAADQ HAKAEAIGQH DMFGLLNSEP EDSKQQFVEC
TPWPDKVWLE GERDTLGLYL TGHPINQYLK ELKHYTSGRL KDVHPTERGK TMKAAGLVVA
TRVMMTKRGS KMGLVTLDDK SARLEVMLFT EAFEKFNHLL EKDRILIIEG EVSFDDFSGG
NRMTARNIID MGEARSHFAN AVEVELQSDK VNALWLNEFK AAVEPWKAGA VPVLINYAQP
QSQAQFTLGD EWRVNPTDEL MLALESLTGS GKVKIVF
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