| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_2807 |
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| Symbol | |
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| ID | 5663199 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | - |
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| Start bp | 3426311 |
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| End bp | 3429436 |
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| Gene Length | 3126 bp |
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| Protein Length | 1041 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 641237448 |
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| Product | hydrophobe/amphiphile efflux-1 (HAE1) family protein |
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| Protein accession | YP_001502661 |
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| Protein GI | 157962627 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.0699119 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGTCGCATT TTTTTATTTC TCGACCTGTT TTTGCATGGG TTATTGCTAT TTTAATTAGC
ATCGCAGGCG TGATTGCCAT TCCTAAGTTG GCTGTCGAGC GTTTTCCTAG CGTTGCGCCG
CCGAGTATTG GTTTGTATCT ATCCTATCCT GGTGCCAGTC CACAAACCAT TAATGACAGT
GTTGTGACCT TGATTGAGCG GGAGATCTCA GGGATTAATG GTCTGCTTTA TTTTAGCTCC
TCGTCAGATG CTAGCGGCAG CGCCTCAATC ACGGTGACCT TTGAAAATGG TACCGATCCT
GAGATGGCTC AGGTTGAGAT CCAAAACAAG ATCAGGGCGA TTGAGCCAAG ACTACCTTTA
GCGGTTCGTC AAATCGGCAT CACGGTGGAA ACAACTTCTT CAAATAACCT GATGTATTTA
GGACTTATCT CACCGAGTGG TGATTACTCA GAGCAGCAAC TGAGTGACTA CATGGTGCGA
AATATCGTTG AGGAGATAAA GCGCGTGCCC GGTGTGGGAC GAGTACAGAT GTATGGCGCT
GAGTTTGCGA TGCGGATCTG GGTCGACCCG GTGGCGTTGA CAGGCTATAA CTTAACGATG
GAAGATGTGA CATTAGCCAT TGCAGAGCAA AATGTGCAGA TCTCTCCTGG CAAAGTGGGT
GACTCTCCGA CATCTGGCGG CCAAATGACG GTGCACTCTC TAACCGCCCA AGGGCAATTA
GAAACCCCTG AGCAATTTAG AGCCATTGTG CTGCGTTCCA ATATTGACGC TGGCATGGTC
CTATTAGGGG ATGTAGCTAA AGTTGAGCTT GGGGCACAAA ATTACCTGTT TAGTAATCGG
GAAAATGGTC AGCAGTCGAC ATCTGCTGCG ATTCAGCTAT CGCCTGGAGC GAATGCGATT
GCGACCTCGC AAGGGATCAG AGACCGATTG GCTGAGCTTA AGCTTGCCAT GCCCAGCAAT
ATGGACTATT CGATTACCTC CGATGCCGCT ATCTTTGCCA AGATCTCGAT TCAAAAAGTG
ATCGTGACAC TGCTCGAAGC AATGGTGTTG GTTTTTTTAG TCATGTATCT CTTTTTACAG
AAAATTCGCT ATACCCTTAT TCCTGCCATT GTTGCACCTA TTGCACTGTT AGGTACATTT
GCAGTGATGT GGCTAATGGG CTTTTCCATC AATGTGTTCA CTATGTTTGG TATGGTGTTG
GCTATCGGTA TTATTGTTGA CGATGCCATC GTAGTGGTTG AAAACGTTGA ACGAGTAATG
GCTGAAACAG GCTTGCCACC CAAAGCGGCC ACAGAGCAGG CGATGAAAAG CATCTATAGC
GCAGTTATTG GGATCACGGC TGTGTTGTCT GCGGTATTTA TACCTATGGC ATTTGCATCG
GGTTCGGTAG GCACAATTTT CCAGCAGTTC TCGCTTGCAA TGGCGGTGTC GATTTTATTT
TCGGCCTTCT TAGCCCTAAC ATTGACGCCA GCTTTGTGTG CAACTCTATT AAAGCCTTTG
ACAGAGCATG ACCATAAAAG CGTTGGTTTT TTTGGCTGGT TTAATCGTAA CTTCCACAAT
TTTACACAAA AAGTGACGGC TGGTGTTGCC CATCTCGTTA AACGAACGGG CAGAGTGATG
GCAGTTTACA TCGTACTCGT GGTGGCATGT ATTTATAGCT TTACTCTAGT GCCGAGCACC
TTTTTACCCG AAGAAGATCA AGGCTACTTT ATGACGTCTA TCCAGCTGCC GCCTGATGCG
ACGGTAGAGC GGACTATGGA TGTGGTGAGT AAAATGGAGG CGTTTACTTT AGGTAGGGAG
GCCGTTGATG CGAGCATGAG TATTCTTGGT TTCAGTTTTA GTGGTACAGG TTCTGGTTCA
GCCTTTGGAA TTACGACCTT AAAAGACTGG CAACAACGTG GTGGTAGCTC TACACAACAA
GAAGTGGCAG CGTTAAGTGA TTATTTAAGT GATTTAACGG AAGGAGAAAT ATTTAGTGTG
TTACCTGCTG CGATAGATGG CTTGGGGAGC TCATCCAATT TATCTTTCCA ATTACAAGAC
AGTGGTAATG CAGGTTACGA GCGCTTCCAA TTGATCCAAA AGGAATTCCT TGAGCAGGCA
TATGCCAGTG AAAAGCTATC ATCTGTGTTC TATGAGGCGC TGCCAGAAAC CAGTGGCATA
CATCTTAATA TTGACCGCGC CAAAGCACGG GCGCTAGGGG TGCCTTTTAA CGCGATTAGC
GAAACTATCT CTACTGCAAT GGGCTCAAAT TACGTTAATG ATTTTCCTAA TAATGGTCGT
TTGCAACAGG TGATTGTTCA AGTTCAAGCT GAGTCAAGAA TGCAACTTGA GGATATATTG
CAACTGGCTA TCCGTAATGA GCAAGGCGGC ACGGTTTATC TTTCTGAATT TGTCACCCCT
GTGTGGCAAA TGGCGCCGCA GCAATTGACA CGATTTAATG GTTTATTGGC CGTGGCAGTA
TCGGCGTCGC CAGCAGCAGG ATTTTCAACT GGAGAGGGGA TGCAAGAGGT AGAACGCATT
GCTGCATCTT TGCCTACGGC TGCGGGAGTT GAGTGGACGG GGCTGTCACT GCAAGAGAAA
CAAGCTGAGT CTCAAACAGT GTGGTTATTG CTGTTCTCTA TGCTGGTTAT TTTCTTAGTA
TTGGCAGCGT TATATGAAAG TTGGTCTATC CCTTTAGCGG TTATTTTGGT AGTGCCGTTA
GGGATTATTG GGGCAATTGC TTCTGTGATG CTAAGTGGCG CTGCCAATGA CGTGTTTTTT
AAAGTGGGTT TAGTGACCAT CATTGGCCTA TCTGCAAAAA ATGCCATTCT AATTGTTGAA
TTTGCTAAGC AAGCTTTGGC TGAAGGAAGT AGCCTCGTCG ACTCGGTATT GCTAGCGACT
AAGCAAAGAC TTAGGCCTAT TTTGATGACG TCTTTGGCCT TTAGTTGCGG CATCATTCCA
CTCTATCTAG CCAGTGGACC CAGCTCAGAG ATCCAAAATT CGATTGGTAC TGGTGTGCTT
GGTGGCATGT TTACCGGCAC GGTATTTGCC GTGTTATTTG TGCCGGTATT TTTTGTGTTT
ATTTGCCAGT TTTTAGAGCG AGTTAGGCGT AACCCCTTTT CATCAAAACT AGCAGATAAA
GGCTAA
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| Protein sequence | MSHFFISRPV FAWVIAILIS IAGVIAIPKL AVERFPSVAP PSIGLYLSYP GASPQTINDS
VVTLIEREIS GINGLLYFSS SSDASGSASI TVTFENGTDP EMAQVEIQNK IRAIEPRLPL
AVRQIGITVE TTSSNNLMYL GLISPSGDYS EQQLSDYMVR NIVEEIKRVP GVGRVQMYGA
EFAMRIWVDP VALTGYNLTM EDVTLAIAEQ NVQISPGKVG DSPTSGGQMT VHSLTAQGQL
ETPEQFRAIV LRSNIDAGMV LLGDVAKVEL GAQNYLFSNR ENGQQSTSAA IQLSPGANAI
ATSQGIRDRL AELKLAMPSN MDYSITSDAA IFAKISIQKV IVTLLEAMVL VFLVMYLFLQ
KIRYTLIPAI VAPIALLGTF AVMWLMGFSI NVFTMFGMVL AIGIIVDDAI VVVENVERVM
AETGLPPKAA TEQAMKSIYS AVIGITAVLS AVFIPMAFAS GSVGTIFQQF SLAMAVSILF
SAFLALTLTP ALCATLLKPL TEHDHKSVGF FGWFNRNFHN FTQKVTAGVA HLVKRTGRVM
AVYIVLVVAC IYSFTLVPST FLPEEDQGYF MTSIQLPPDA TVERTMDVVS KMEAFTLGRE
AVDASMSILG FSFSGTGSGS AFGITTLKDW QQRGGSSTQQ EVAALSDYLS DLTEGEIFSV
LPAAIDGLGS SSNLSFQLQD SGNAGYERFQ LIQKEFLEQA YASEKLSSVF YEALPETSGI
HLNIDRAKAR ALGVPFNAIS ETISTAMGSN YVNDFPNNGR LQQVIVQVQA ESRMQLEDIL
QLAIRNEQGG TVYLSEFVTP VWQMAPQQLT RFNGLLAVAV SASPAAGFST GEGMQEVERI
AASLPTAAGV EWTGLSLQEK QAESQTVWLL LFSMLVIFLV LAALYESWSI PLAVILVVPL
GIIGAIASVM LSGAANDVFF KVGLVTIIGL SAKNAILIVE FAKQALAEGS SLVDSVLLAT
KQRLRPILMT SLAFSCGIIP LYLASGPSSE IQNSIGTGVL GGMFTGTVFA VLFVPVFFVF
ICQFLERVRR NPFSSKLADK G
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