| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_2715 |
|---|
| Symbol | |
|---|
| ID | 5663108 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella pealeana ATCC 700345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009901 |
|---|
| Strand | + |
|---|
| Start bp | 3318677 |
|---|
| End bp | 3320323 |
|---|
| Gene Length | 1647 bp |
|---|
| Protein Length | 548 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 641237357 |
|---|
| Product | pyridoxal-dependent decarboxylase |
|---|
| Protein accession | YP_001502570 |
|---|
| Protein GI | 157962536 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0076] Glutamate decarboxylase and related PLP-dependent proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.288765 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACAGCAA GAAAAGCCAC CGCATCAGAA GAGGCGTTAC TGCGAATTTT TACGGTTCCA
GAAGCCCCAG ACTCTACCCT CAGTGTGATT GAGCAAAACA TCTCGCAAAA CCTAATGGGT
TTCTTGCAAG AAAGCGTGGT GGCTGTCGAG AAACCGCTTT CTGAAGTTGA ACTGGACTTT
CAACAGTACC ATATTCCTGC TGCGCCGCAG TTTGTGTCTG ATTATGCCGA TAATATGATG
CAAACATTAG TAGCCCACTC AGTGCACACC TCTGCGCCCA GTTTTATCGG TCATATGACC
TCGGCTCTAC CTTACTTTGT ATTACCTCTG TCTAAGATGA TGGTCGGGCT TAATCAAAAC
TTAGTAAAAA TAGAGACCTC TAAAGCCTTT ACGCCGTTAG AGCGCCAAGT GCTGGGGATG
ATGCATCATC TTATTTATAA CCAAGATGAA ACCTTTTACC AAAGCTGGAT GCACAGCGCC
AATGTCTCTT TGGGCGCATT TTGCTCTGGC GGCACAGTCG CTAATATCAC CGCCTTGTGG
ACGGCTCGTA ACCAACTGCT TAAGGCCGAC GGTGACTTTA AAGGTATCGC CAAGCAAGGC
CTACTCAAAG GCCTGCGTCA CTATGGTTAC GATGACTTAG CTATCTTGGT CTCTGAGCGC
GGTCACTATT CGCTTGCTAA AACTGCAGAC TTACTAGGTA TTGGCCGAGA AAACATCATT
CAGGTACCTA CATCGGACGA TAACAAGGTC GATGTGGTTA AGATGCGTGA AATAGCTGAG
CAACTTGATA AAGACAACAT TAAAGTCATG GCGATTGTTG GCGTTGCTGG TACCACTGAA
ACTGGCAATA TTGATCCGCT AAATGCGCTT GCCGATCTAG CCGCTGAGCT AAACTGTCAC
TTCCATGTCG ACGCTGCATG GGGCGGCGCC AGTCTATTAT CGAATAAATA CCGTCACTTG
TTAGCCGGGA TTGAGCGCGC CGATTCGGTC ACCATCGATG CCCATAAGCA GATGTATGTC
CCCATGGGCG CAGGTATGGT GATCTTTAAA GACCCAACCT TTGCTAACGC CATTAAACAT
CATGCCGAGT ATATCCTACG TCAAGGCTCG AAAGACTTAG GCAGTCAGAC CTTAGAGGGC
TCTCGCCCAG GTATGGCAAT GCTAGTACAT GCTTGCCTTA AGGTGATAGG CCGCGAAGGT
TATGAAATTT TGATTAATAA CAGCCTAGAG AAGGCGCGTT ATTTTGCAGA CTTGATCACC
GCTGAAGCCG ACTTTGAGCT GGTGTCTAAA CCTGAACTTT GTCTACTTAC CTACCGTTAT
GTGCCACAAT CGGTACAAAT TGCCATGGCT AAAGCTCGTG AAATAGGTGA TACAGCAACG
CTTGCACAGT TCAATGGTTT GCTCGATGGT CTAACTAAGT TTGTACAAAA AACTCAGCGC
GAGCAAGGCA CCTCGTTTGT ATCACGAACC CGAATTAATC CTGAAAGCCA CCAGCTCATG
GATCTCAAAG CCGTGGTATT TAGGGTGGTA TTAGCCAACC CACTCACTAG CCATGACATT
TTACAGCAAG TGTTAGCCGA GCAAGCCCAA ATAGCCAAGA GTGAAACTCA CTTCCTACCT
CAGTTGCTCA CTCTGGCGCA GAGCTAA
|
|---|
| Protein sequence | MTARKATASE EALLRIFTVP EAPDSTLSVI EQNISQNLMG FLQESVVAVE KPLSEVELDF
QQYHIPAAPQ FVSDYADNMM QTLVAHSVHT SAPSFIGHMT SALPYFVLPL SKMMVGLNQN
LVKIETSKAF TPLERQVLGM MHHLIYNQDE TFYQSWMHSA NVSLGAFCSG GTVANITALW
TARNQLLKAD GDFKGIAKQG LLKGLRHYGY DDLAILVSER GHYSLAKTAD LLGIGRENII
QVPTSDDNKV DVVKMREIAE QLDKDNIKVM AIVGVAGTTE TGNIDPLNAL ADLAAELNCH
FHVDAAWGGA SLLSNKYRHL LAGIERADSV TIDAHKQMYV PMGAGMVIFK DPTFANAIKH
HAEYILRQGS KDLGSQTLEG SRPGMAMLVH ACLKVIGREG YEILINNSLE KARYFADLIT
AEADFELVSK PELCLLTYRY VPQSVQIAMA KAREIGDTAT LAQFNGLLDG LTKFVQKTQR
EQGTSFVSRT RINPESHQLM DLKAVVFRVV LANPLTSHDI LQQVLAEQAQ IAKSETHFLP
QLLTLAQS
|
|---|
| |