| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_2704 |
|---|
| Symbol | |
|---|
| ID | 5663097 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella pealeana ATCC 700345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009901 |
|---|
| Strand | + |
|---|
| Start bp | 3303193 |
|---|
| End bp | 3303729 |
|---|
| Gene Length | 537 bp |
|---|
| Protein Length | 178 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 641237346 |
|---|
| Product | type IV pilin, putative |
|---|
| Protein accession | YP_001502559 |
|---|
| Protein GI | 157962525 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4970] Tfp pilus assembly protein FimT |
|---|
| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACATTCG CCTCTACACG CAGAACAGGC TTTACCTTAA TTGAAATGGT TGTGGTAATC
ATTGTGCTTG GGATCATAGC TGTTATTGCC CTACCAAAGT TTGTTAATTT TCACTCCGAT
AGTAAAGTGG CGACCCTAGA TGGTATAGCA GCCGCAATGA AGAGTGGTTT AGATTTAGTT
CACAGCAAAG CCGTAATTGA AGGTGAAGCT AAAGGCGCTG GCAGTATTGA GCATGCAGAC
GTTACTATTC CACTCTATAA CGGTTACCCC GCCGTCGATG GCACTGACAG CTTCGATGAG
CTAAACCGGC AGGTACGCGC TTGGCTTGAT ATCGACTCTG TGTCACTGAC CGCCATCAAG
CTTGATAACA ACGCAGCGCC GTTCTTTATC GACAAGTCCA CCGCCAATAA CCACATTTAC
ATCTTTTTCT CTGAAGATCT AAACGATAAA AGCGTCAGCT TTAACTGCCA TATTCGCTAC
GAAAATGCAG TCGATGCCCC TGAACCTGTG ATTACCGTCA AACACAGTGA CTGCTAA
|
|---|
| Protein sequence | MTFASTRRTG FTLIEMVVVI IVLGIIAVIA LPKFVNFHSD SKVATLDGIA AAMKSGLDLV
HSKAVIEGEA KGAGSIEHAD VTIPLYNGYP AVDGTDSFDE LNRQVRAWLD IDSVSLTAIK
LDNNAAPFFI DKSTANNHIY IFFSEDLNDK SVSFNCHIRY ENAVDAPEPV ITVKHSDC
|
|---|
| |