| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_2673 |
|---|
| Symbol | |
|---|
| ID | 5663066 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella pealeana ATCC 700345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009901 |
|---|
| Strand | + |
|---|
| Start bp | 3256425 |
|---|
| End bp | 3257315 |
|---|
| Gene Length | 891 bp |
|---|
| Protein Length | 296 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 641237312 |
|---|
| Product | binding-protein-dependent transport systems inner membrane component |
|---|
| Protein accession | YP_001502528 |
|---|
| Protein GI | 157962494 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG4171] ABC-type antimicrobial peptide transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.208086 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCGCGAA TTAGGATCTA CCAAGAAGAC CATATTCTTT CTCCAACCCA GAAAGTCTGG
CAGGCATTTG CCGATAACCC ATTTGCACTT GTTGGTCTCT GGGCTGTGTG TTGCATACTT
ACCTTAGCGG TTTTCGGCCC TTGGATTGCG CCCTTCTCAC CAGAGCAGCA AGACTCACTC
GCGTTACTGT TACCGCCATC TTGGGACGCT AGCGGCACAG TTGAGCACTT TCTCGGGACC
GATGACTTAG GTCGAGATAT TTTCAGTCGT CTACTTCACG GCGCTCACCT TACTTTTGGT
ATGGCGCTGG CAATCGTACT GGCTTCATTA GTCGTAGGTT TTATTATCGG CTCCATTTCT
GGGATGATGA AAGGTCTAAA ATCTTCGATA TTGAGCCACC TATTGGATGC GCTCTTATCC
ATCCCTTCGC TACTATTAGC CATTTTGGTT GTCGCGATAA TGGGTCCTGG GCTTGAAAAT
GTATTTTGGG CGGTTGGTAT TGCTCTAACG CCGCAGTTTG TTAGGGCTAT TCATCAGGCT
GTACATGAAG AGTTGCAAAA AGACTACGTT ACGGCAGCGA AGCTAGATGG GGCAAACTCA
ATTCAAGTTT TTTGGTACGT GATCATGCCT AACGTCTGGG AAACCGTAAT TATTCAAACT
ACCTTGGCAA TTTCTGCCGC AATTTTAGAT ATTGCCGCGC TGGGATTTTT AAACCTTGGC
GCTCAGGCTC CAAGCCCAGA GTGGGGAGCG ATGGTGTCAC AAGGGCTTGA TAATTTATTA
ACCGCCCCAT GGACGGTAAC CATCCCTGGT GTTGCCATTT TATGTAGCGT ACTGGCTATC
AACTTAGTTG GTGACGGTTT GAGATCGGCG TTATCGCCCA TCAGAAATTA A
|
|---|
| Protein sequence | MPRIRIYQED HILSPTQKVW QAFADNPFAL VGLWAVCCIL TLAVFGPWIA PFSPEQQDSL
ALLLPPSWDA SGTVEHFLGT DDLGRDIFSR LLHGAHLTFG MALAIVLASL VVGFIIGSIS
GMMKGLKSSI LSHLLDALLS IPSLLLAILV VAIMGPGLEN VFWAVGIALT PQFVRAIHQA
VHEELQKDYV TAAKLDGANS IQVFWYVIMP NVWETVIIQT TLAISAAILD IAALGFLNLG
AQAPSPEWGA MVSQGLDNLL TAPWTVTIPG VAILCSVLAI NLVGDGLRSA LSPIRN
|
|---|
| |