| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_2639 |
|---|
| Symbol | |
|---|
| ID | 5663032 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella pealeana ATCC 700345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009901 |
|---|
| Strand | + |
|---|
| Start bp | 3216799 |
|---|
| End bp | 3217689 |
|---|
| Gene Length | 891 bp |
|---|
| Protein Length | 296 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 641237277 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_001502494 |
|---|
| Protein GI | 157962460 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTACTCAC ACCTTCCGCC ATTAAATGCA CTTAGAGCCT TTGAAGCATC GGCTAGGCTG
ATGAGCTTTA CCCTTGCTGG TAAAGAACTC TTTGTCACCC ATGGAGCCAT CAGCAAGCAG
GTAAAGTTAT TGGAAGAGTT CGTGGGTATG CCGCTGTTTA TTAGGCAACA TCGTAGCCTT
AAACTCACCG ATGAGGGCGA GCGCTACTTT ATTAATATCA AAGCAGCGCT GCATACGATT
AACAACGCCA CTAGCGACTT GGTCACTCAA CCTCTGAGGA CTCAAACCTT GGCGATTAAT
GTATTACCCA GCTTAACGAT TAGCTGGCTA ATACCTAGAA TGGAAGAGTT TAAGTCGCGC
TATCCTCATC TGTATGTCGA CTTATCCATT GGTGACTTTG AAGTTGACTT TAACAGTGTT
AATTACGATA TCGCCATTCG AAGCAGTACC ACAGTGCCAA AAGCGGCCAA TGTAATAACC
TTAATGGATG AGGATCTCTG TCTGGTGTGC TCGCCTGATC TCGCCTGTAA TCTTAAAAAC
CTTGAAGACG TAAACACCAT GACCTTATTA CAGCACACGA CAAGGCCGGG GCTATGGCAG
TTATGGGCCA AGAGTGTTGG GCTTGAGCTA ACGACGGAAA AAAAGTTTGG TGTAGAGCAT
TTTTATATGC TCAGCCAGGC GGCTGTAAGT GGTATGGGCG TAGCACTGAT CCCGCGCTTC
TTTATTGAGG ATGAGCTTAA AATGGGCAGA CTGGTGATCC CATTCAATGC AGATTTCACC
AGCCCTTATC GCTATTACTT ATTGACACCA AAATCGAGTA ACCTGCCGTT AAAAGTGCAA
TCTTTTATCG ACTGGCTACT CGAACTATTT AGCCCATATA GGCAGCAATA G
|
|---|
| Protein sequence | MYSHLPPLNA LRAFEASARL MSFTLAGKEL FVTHGAISKQ VKLLEEFVGM PLFIRQHRSL
KLTDEGERYF INIKAALHTI NNATSDLVTQ PLRTQTLAIN VLPSLTISWL IPRMEEFKSR
YPHLYVDLSI GDFEVDFNSV NYDIAIRSST TVPKAANVIT LMDEDLCLVC SPDLACNLKN
LEDVNTMTLL QHTTRPGLWQ LWAKSVGLEL TTEKKFGVEH FYMLSQAAVS GMGVALIPRF
FIEDELKMGR LVIPFNADFT SPYRYYLLTP KSSNLPLKVQ SFIDWLLELF SPYRQQ
|
|---|
| |